Literature DB >> 20809366

A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks.

Svetoslav Nikolov1, Julio Vera, Ulf Schmitz, Olaf Wolkenhauer.   

Abstract

In this paper we present and discuss a model-based approach to link miRNA translational control with cell signalling networks. MicroRNAs are small regulatory RNAs that are able to regulate the activity and the stability of specific messenger RNA and have been implicated in tumour progression due to their ability to translationally regulate critical oncogenes and tumour suppressors. In our approach, data on protein-protein interactions and miRNA regulation, obtained from bioinformatics databases, are integrated with quantitative experimental data using mathematical modelling. Predictive computational simulations and qualitative (bifurcation) analyses of those mathematical models are employed to further support the investigation of such multifactorial networks in the context of cancer progression. We illustrate our approach with the C-Myc/E2F signalling network, involved in the progression of several tumour subtypes, including colorectal cancer.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20809366     DOI: 10.1007/s12064-010-0109-5

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  65 in total

1.  Hopf bifurcation in epidemic models with a time delay in vaccination.

Authors:  Q J Khan; D Greenhalgh
Journal:  IMA J Math Appl Med Biol       Date:  1999-06

2.  From simple to complex oscillatory behavior in metabolic and genetic control networks.

Authors:  Albert Goldbeter; Didier Gonze; Gerald Houart; Jean-Christophe Leloup; Jose Halloy; Genevieve Dupont
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

3.  Computational modeling of post-transcriptional gene regulation by microRNAs.

Authors:  Raya Khanin; Veronica Vinciotti
Journal:  J Comput Biol       Date:  2008-04       Impact factor: 1.479

4.  RAS is regulated by the let-7 microRNA family.

Authors:  Steven M Johnson; Helge Grosshans; Jaclyn Shingara; Mike Byrom; Rich Jarvis; Angie Cheng; Emmanuel Labourier; Kristy L Reinert; David Brown; Frank J Slack
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

5.  A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis.

Authors:  Xin Lai; Svetoslav Nikolov; Olaf Wolkenhauer; Julio Vera
Journal:  Comput Biol Chem       Date:  2009-07-09       Impact factor: 2.877

6.  c-Myc-regulated microRNAs modulate E2F1 expression.

Authors:  Kathryn A O'Donnell; Erik A Wentzel; Karen I Zeller; Chi V Dang; Joshua T Mendell
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

Review 7.  Apoptotic signaling by c-MYC.

Authors:  B Hoffman; D A Liebermann
Journal:  Oncogene       Date:  2008-10-27       Impact factor: 9.867

8.  Short RNAs repress translation after initiation in mammalian cells.

Authors:  Christian P Petersen; Marie-Eve Bordeleau; Jerry Pelletier; Phillip A Sharp
Journal:  Mol Cell       Date:  2006-02-17       Impact factor: 17.970

9.  Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival.

Authors:  Junichi Takamizawa; Hiroyuki Konishi; Kiyoshi Yanagisawa; Shuta Tomida; Hirotaka Osada; Hideki Endoh; Tomoko Harano; Yasushi Yatabe; Masato Nagino; Yuji Nimura; Tetsuya Mitsudomi; Takashi Takahashi
Journal:  Cancer Res       Date:  2004-06-01       Impact factor: 12.701

10.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

View more
  4 in total

1.  Emerging modelling methodologies in medicine and biology, Introduction to the special issue.

Authors:  Jamie Davies; Michael Grinfeld; Steven D Webb
Journal:  Theory Biosci       Date:  2011-03       Impact factor: 1.919

2.  A systems' biology approach to study microRNA-mediated gene regulatory networks.

Authors:  Xin Lai; Animesh Bhattacharya; Ulf Schmitz; Manfred Kunz; Julio Vera; Olaf Wolkenhauer
Journal:  Biomed Res Int       Date:  2013-11-17       Impact factor: 3.411

3.  Computer simulation models as a tool to investigate the role of microRNAs in osteoarthritis.

Authors:  Carole J Proctor; Graham R Smith
Journal:  PLoS One       Date:  2017-11-02       Impact factor: 3.240

4.  Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs.

Authors:  Xin Lai; Ulf Schmitz; Shailendra K Gupta; Animesh Bhattacharya; Manfred Kunz; Olaf Wolkenhauer; Julio Vera
Journal:  Nucleic Acids Res       Date:  2012-07-13       Impact factor: 16.971

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.