Literature DB >> 20806781

Rapid collapse into a molten globule is followed by simple two-state kinetics in the folding of lysozyme from bacteriophage λ.

Alexandre Di Paolo1, Dorothée Balbeur, Edwin De Pauw, Christina Redfield, André Matagne.   

Abstract

Stopped-flow fluorescence and circular dichroism spectroscopy have been used in combination with quenched-flow hydrogen exchange labeling, monitored by two-dimensional NMR and electrospray ionization mass spectrometry, to investigate the folding kinetics of lysozyme from bacteriophage λ (λ lysozyme) at pH 5.6, 20 °C. The first step in the folding of λ lysozyme occurs very rapidly (τ < 1 ms) after refolding is initiated and involves both hydrophobic collapse and formation of a high content of secondary structure but only weak protection from (1)H/(2)H exchange and no fixed tertiary structure organization. This early folding step is reflected in the dead-time events observed in the far-UV CD and ANS fluorescence experiments. Following accumulation of this kinetic molten globule species, the secondary structural elements are stabilized and the majority (ca. 88%) of refolding molecules acquire native-like properties in a highly cooperative two-state process, with τ = 0.15 ± 0.03 s. This is accompanied by the acquisition of substantial native-like protection from hydrogen exchange. A double-mixing experiment and the absence of a denaturant effect reveal that slow (τ = 5 ± 1 s) folding of the remaining (ca. 12%) molecules is rate limited by the cis/trans isomerization of prolines that are trans in the folded enzyme. In addition, native state hydrogen exchange and classical denaturant unfolding experiments have been used to characterize the thermodynamic properties of the enzyme. In good agreement with previous crystallographic evidence, our results show that λ lysozyme is a highly dynamic protein, with relatively low conformational stability (ΔG°(N-U) = 25 ± 2 kJ·mol(-1)).

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Year:  2010        PMID: 20806781     DOI: 10.1021/bi101126f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  5 in total

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Authors:  Lesley H Greene; Hai Li; Junyan Zhong; Guoxia Zhao; Khym Wilson
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2.  Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity.

Authors:  Rita Pancsa; Daniele Raimondi; Elisa Cilia; Wim F Vranken
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

3.  Current structure predictors are not learning the physics of protein folding.

Authors:  Carlos Outeiral; Daniel A Nissley; Charlotte M Deane
Journal:  Bioinformatics       Date:  2022-01-31       Impact factor: 6.937

Review 4.  DMSO-Quenched H/D-Exchange 2D NMR Spectroscopy and Its Applications in Protein Science.

Authors:  Kunihiro Kuwajima; Maho Yagi-Utsumi; Saeko Yanaka; Koichi Kato
Journal:  Molecules       Date:  2022-06-10       Impact factor: 4.927

5.  Probing the Folding-Unfolding Transition of a Thermophilic Protein, MTH1880.

Authors:  Heeyoun Kim; Sangyeol Kim; Youngjin Jung; Jeongmin Han; Ji-Hye Yun; Iksoo Chang; Weontae Lee
Journal:  PLoS One       Date:  2016-01-14       Impact factor: 3.240

  5 in total

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