Literature DB >> 20804210

Nanometer to millimeter scale peptide-porphyrin materials.

Daniil V Zaytsev1, Fei Xie, Madhumita Mukherjee, Alexey Bludin, Borries Demeler, Robert M Breece, David L Tierney, Michael Y Ogawa.   

Abstract

AQ-Pal14 is a 30-residue polypeptide that was designed to form an α-helical coiled coil that contains a metal-binding 4-pyridylalanine residue on its solvent-exposed surface. However, characterization of this peptide shows that it exists as a three-stranded coiled coil, not a two-stranded one as predicted from its design. Reaction with cobalt(III) protoporphyrin IX (Co-PPIX) produces a six-coordinate Co-PPIX(AQ-Pal14)(2) species that creates two coiled-coil oligomerization domains coordinated to opposite faces of the porphyrin ring. It is found that this species undergoes a buffer-dependent self-assembly process: nanometer-scale globular materials were formed when these components were reacted in unbuffered H(2)O, while millimeter-scale, rod-like materials were prepared when the reaction was performed in phosphate buffer (20 mM, pH 7). It is suggested that assembly of the globular material is dictated by the conformational properties of the coiled-coil forming AQ-Pal14 peptide, whereas that of the rod-like material involves interactions between Co-PPIX and phosphate ion.

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Year:  2010        PMID: 20804210      PMCID: PMC2952671          DOI: 10.1021/bm100540t

Source DB:  PubMed          Journal:  Biomacromolecules        ISSN: 1525-7797            Impact factor:   6.988


  42 in total

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Authors:  Shuguang Zhang
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

Review 2.  Peptide-based fibrous biomaterials: Some things old, new and borrowed.

Authors:  Derek N Woolfson; Maxim G Ryadnov
Journal:  Curr Opin Chem Biol       Date:  2006-10-09       Impact factor: 8.822

3.  Design of a selective metal ion switch for self-assembly of peptide-based fibrils.

Authors:  Steven N Dublin; Vincent P Conticello
Journal:  J Am Chem Soc       Date:  2007-12-08       Impact factor: 15.419

4.  The conformational manifold of ferricytochrome c explored by visible and far-UV electronic circular dichroism spectroscopy.

Authors:  Andrew Hagarman; Laura Duitch; Reinhard Schweitzer-Stenner
Journal:  Biochemistry       Date:  2008-08-15       Impact factor: 3.162

Review 5.  Alpha-helical coiled coils and bundles: how to design an alpha-helical protein.

Authors:  C Cohen; D A Parry
Journal:  Proteins       Date:  1990

6.  Incorporating electron-transfer functionality into synthetic metalloproteins from the bottom-up.

Authors:  Jing Hong; Olesya A Kharenko; Michael Y Ogawa
Journal:  Inorg Chem       Date:  2006-12-11       Impact factor: 5.165

7.  Metal-induced folding of a designed metalloprotein.

Authors:  Olesya A Kharenko; Michael Y Ogawa
Journal:  J Inorg Biochem       Date:  2004-11       Impact factor: 4.155

8.  Effect of chain length on the formation and stability of synthetic alpha-helical coiled coils.

Authors:  J Y Su; R S Hodges; C M Kay
Journal:  Biochemistry       Date:  1994-12-27       Impact factor: 3.162

9.  Self assembly of coiled-coil peptide-porphyrin complexes.

Authors:  Bashkim Kokona; Andrew M Kim; R Claire Roden; Joshua P Daniels; Brian J Pepe-Mooney; Brian C Kovaric; Julio C de Paula; Karl A Johnson; Robert Fairman
Journal:  Biomacromolecules       Date:  2009-06-08       Impact factor: 6.988

10.  A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape.

Authors:  Emre Brookes; Weiming Cao; Borries Demeler
Journal:  Eur Biophys J       Date:  2009-02-27       Impact factor: 1.733

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  5 in total

1.  Solvent-Tuned Self-Assembled Nanostructures of Chiral l/d-Phenylalanine Derivatives of Protoporphyrin IX.

Authors:  Mr Sharad R Bobe; Mohammad Al Kobaisi; Sheshanath V Bhosale; Sidhanath V Bhosale
Journal:  ChemistryOpen       Date:  2015-03-14       Impact factor: 2.911

Review 2.  The Structure and Topology of α-Helical Coiled Coils.

Authors:  Andrei N Lupas; Jens Bassler; Stanislaw Dunin-Horkawicz
Journal:  Subcell Biochem       Date:  2017

3.  Oxygen and Conformation Dependent Protein Oxidation and Aggregation by Porphyrins in Hepatocytes and Light-Exposed Cells.

Authors:  Dhiman Maitra; Eric L Carter; Rani Richardson; Laure Rittié; Venkatesha Basrur; Haoming Zhang; Alexey I Nesvizhskii; Yoichi Osawa; Matthew W Wolf; Stephen W Ragsdale; Nicolai Lehnert; Harald Herrmann; M Bishr Omary
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2019-06-04

Review 4.  Porphyrin-Induced Protein Oxidation and Aggregation as a Mechanism of Porphyria-Associated Cell Injury.

Authors:  Dhiman Maitra; Juliana Bragazzi Cunha; Jared S Elenbaas; Herbert L Bonkovsky; Jordan A Shavit; M Bishr Omary
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2019-06-21

Review 5.  Peptide-Tetrapyrrole Supramolecular Self-Assemblies: State of the Art.

Authors:  Paolo Dognini; Christopher R Coxon; Wendel A Alves; Francesca Giuntini
Journal:  Molecules       Date:  2021-01-28       Impact factor: 4.411

  5 in total

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