Literature DB >> 20802839

HARDI DATA DENOISING USING VECTORIAL TOTAL VARIATION AND LOGARITHMIC BARRIER.

Yunho Kim1, Paul M Thompson, Luminita A Vese.   

Abstract

In this work, we wish to denoise HARDI (High Angular Resolution Diffusion Imaging) data arising in medical brain imaging. Diffusion imaging is a relatively new and powerful method to measure the three-dimensional profile of water diffusion at each point in the brain. These images can be used to reconstruct fiber directions and pathways in the living brain, providing detailed maps of fiber integrity and connectivity. HARDI data is a powerful new extension of diffusion imaging, which goes beyond the diffusion tensor imaging (DTI) model: mathematically, intensity data is given at every voxel and at any direction on the sphere. Unfortunately, HARDI data is usually highly contaminated with noise, depending on the b-value which is a tuning parameter pre-selected to collect the data. Larger b-values help to collect more accurate information in terms of measuring diffusivity, but more noise is generated by many factors as well. So large b-values are preferred, if we can satisfactorily reduce the noise without losing the data structure. Here we propose two variational methods to denoise HARDI data. The first one directly denoises the collected data S, while the second one denoises the so-called sADC (spherical Apparent Diffusion Coefficient), a field of radial functions derived from the data. These two quantities are related by an equation of the form S = S(S)exp (-b · sADC) (in the noise-free case). By applying these two different models, we will be able to determine which quantity will most accurately preserve data structure after denoising. The theoretical analysis of the proposed models is presented, together with experimental results and comparisons for denoising synthetic and real HARDI data.

Entities:  

Year:  2010        PMID: 20802839      PMCID: PMC2927392          DOI: 10.3934/ipi.2010.4.273

Source DB:  PubMed          Journal:  Inverse Probl Imaging (Springfield)        ISSN: 1930-8337            Impact factor:   1.639


  24 in total

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5.  Symmetric positive 4th order tensors & their estimation from diffusion weighted MRI.

Authors:  Angelos Barmpoutis; Bing Jian; Baba C Vemuri; Timothy M Shepherd
Journal:  Inf Process Med Imaging       Date:  2007

6.  HARDI denoising: variational regularization of the spherical apparent diffusion coefficient sADC.

Authors:  Yunho Kim; Paul M Thompson; Arthur W Toga; Luminita Vese; Liang Zhan
Journal:  Inf Process Med Imaging       Date:  2009

7.  Fluid registration of diffusion tensor images using information theory.

Authors:  M C Chiang; A D Leow; A D Klunder; R A Dutton; M Barysheva; S E Rose; K L McMahon; G I de Zubicaray; A W Toga; P M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

8.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI.

Authors:  P J Basser; C Pierpaoli
Journal:  J Magn Reson B       Date:  1996-06

9.  MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders.

Authors:  D Le Bihan; E Breton; D Lallemand; P Grenier; E Cabanis; M Laval-Jeantet
Journal:  Radiology       Date:  1986-11       Impact factor: 11.105

10.  Information-theoretic analysis of brain white matter fiber orientation distribution functions.

Authors:  Ming-Chang Chiang; Andrea D Klunder; Katie McMahon; Greig I de Zubicaray; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Inf Process Med Imaging       Date:  2007
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  2 in total

1.  Improved diffusion imaging through SNR-enhancing joint reconstruction.

Authors:  Justin P Haldar; Van J Wedeen; Marzieh Nezamzadeh; Guangping Dai; Michael W Weiner; Norbert Schuff; Zhi-Pei Liang
Journal:  Magn Reson Med       Date:  2012-03-05       Impact factor: 4.668

2.  A VARIATIONAL MODEL FOR DENOISING HIGH ANGULAR RESOLUTION DIFFUSION IMAGING.

Authors:  M Tong; Y Kim; L Zhan; G Sapiro; C Lenglet; B A Mueller; P M Thompson; L A Vese
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012
  2 in total

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