Literature DB >> 20802046

Complete genome sequence of Staphylococcus aureus strain JKD6008, an ST239 clone of methicillin-resistant Staphylococcus aureus with intermediate-level vancomycin resistance.

Benjamin P Howden1, Torsten Seemann, Paul F Harrison, Chris R McEvoy, Jo-Ann L Stanton, Christy J Rand, Chris W Mason, Slade O Jensen, Neville Firth, John K Davies, Paul D R Johnson, Timothy P Stinear.   

Abstract

We report here the complete 2.92-Mb genome sequence of a clinical isolate of methicillin-resistant Staphylococcus aureus subsp. aureus that demonstrates intermediate-level vancomycin resistance. The strain, named JKD6008, belongs to multilocus sequence type 239 and was isolated from the bloodstream of a patient in New Zealand in 2003.

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Year:  2010        PMID： 20802046      PMCID： PMC2953705          DOI： 10.1128/JB.00951-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Isolates with low-level vancomycin resistance associated with persistent methicillin-resistant Staphylococcus aureus bacteremia.

Authors:  Benjamin P Howden; Paul D R Johnson; Peter B Ward; Timothy P Stinear; John K Davies
Journal:  Antimicrob Agents Chemother       Date:  2006-09       Impact factor: 5.191

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Analysis of the prototypical Staphylococcus aureus multiresistance plasmid pSK1.

Authors:  Slade O Jensen; Sumalee Apisiridej; Stephen M Kwong; Yee Hwa Yang; Ronald A Skurray; Neville Firth
Journal:  Plasmid       Date:  2010-06-12       Impact factor: 3.466

6.  A new DNA sequence assembly program.

Authors:  J K Bonfield; K f Smith; R Staden
Journal:  Nucleic Acids Res       Date:  1995-12-25       Impact factor: 16.971

7.  Genomic analysis reveals a point mutation in the two-component sensor gene graS that leads to intermediate vancomycin resistance in clinical Staphylococcus aureus.

Authors:  Benjamin P Howden; Timothy P Stinear; David L Allen; Paul D R Johnson; Peter B Ward; John K Davies
Journal:  Antimicrob Agents Chemother       Date:  2008-07-21       Impact factor: 5.191

8.  SHRiMP: accurate mapping of short color-space reads.

Authors:  Stephen M Rumble; Phil Lacroute; Adrian V Dalca; Marc Fiume; Arend Sidow; Michael Brudno
Journal:  PLoS Comput Biol       Date:  2009-05-22       Impact factor: 4.475

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  34 in total

1.  Carriage of an ACME II variant may have contributed to methicillin-resistant Staphylococcus aureus sequence type 239-like strain replacement in Liverpool Hospital, Sydney, Australia.

Authors:  B A Espedido; J A Steen; T Barbagiannakos; J Mercer; D L Paterson; S M Grimmond; M A Cooper; I B Gosbell; S J van Hal; S O Jensen
Journal:  Antimicrob Agents Chemother       Date:  2012-03-05       Impact factor: 5.191

Review 2.  Consolidating and Exploring Antibiotic Resistance Gene Data Resources.

Authors:  Basil Britto Xavier; Anupam J Das; Guy Cochrane; Sandra De Ganck; Samir Kumar-Singh; Frank Møller Aarestrup; Herman Goossens; Surbhi Malhotra-Kumar
Journal:  J Clin Microbiol       Date:  2016-01-27       Impact factor: 5.948

3.  Complete genome sequence of Staphylococcus aureus T0131, an ST239-MRSA-SCCmec type III clone isolated in China.

Authors:  Yang Li; Boyang Cao; Yongfu Zhang; Jiali Zhou; Bin Yang; Lei Wang
Journal:  J Bacteriol       Date:  2011-05-06       Impact factor: 3.490

4.  Examination of the Staphylococcus aureus nitric oxide reductase (saNOR) reveals its contribution to modulating intracellular NO levels and cellular respiration.

Authors:  A M Lewis; S S Matzdorf; J L Endres; I H Windham; K W Bayles; K C Rice
Journal:  Mol Microbiol       Date:  2015-03-16       Impact factor: 3.501

Review 5.  Staphylococcus aureus biofilms: properties, regulation, and roles in human disease.

Authors:  Nathan K Archer; Mark J Mazaitis; J William Costerton; Jeff G Leid; Mary Elizabeth Powers; Mark E Shirtliff
Journal:  Virulence       Date:  2011-09-01       Impact factor: 5.882

6.  Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expression.

Authors:  Christopher R E McEvoy; Brian Tsuji; Wei Gao; Torsten Seemann; Jessica L Porter; Kenneth Doig; Dung Ngo; Benjamin P Howden; Timothy P Stinear
Journal:  Antimicrob Agents Chemother       Date:  2013-04-29       Impact factor: 5.191

7.  walK and clpP mutations confer reduced vancomycin susceptibility in Staphylococcus aureus.

Authors:  Mitsutaka Shoji; Longzhu Cui; Risa Iizuka; Akira Komoto; Hui-min Neoh; Yukiko Watanabe; Tomomi Hishinuma; Keiichi Hiramatsu
Journal:  Antimicrob Agents Chemother       Date:  2011-05-31       Impact factor: 5.191

8.  ST2249-MRSA-III: a second major recombinant methicillin-resistant Staphylococcus aureus clone causing healthcare infection in the 1970s.

Authors:  G R Nimmo; J A Steen; S Monecke; R Ehricht; P Slickers; J C Thomas; S Appleton; R V Goering; D A Robinson; G W Coombs
Journal:  Clin Microbiol Infect       Date:  2015-01-28       Impact factor: 8.067

9.  Analysis of the small RNA transcriptional response in multidrug-resistant Staphylococcus aureus after antimicrobial exposure.

Authors:  Benjamin P Howden; Marie Beaume; Paul F Harrison; David Hernandez; Jacques Schrenzel; Torsten Seemann; Patrice Francois; Timothy P Stinear
Journal:  Antimicrob Agents Chemother       Date:  2013-06-03       Impact factor: 5.191

10.  Antibiotic-induced autoactivation of IS256 in Staphylococcus aureus.

Authors:  Franziska Schreiber; Christiane Szekat; Michaele Josten; Hans-Georg Sahl; Gabriele Bierbaum
Journal:  Antimicrob Agents Chemother       Date:  2013-09-30       Impact factor: 5.191
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