Literature DB >> 20799843

Adaptive spectral window sizes for extraction of diagnostic features from optical spectra.

Chih-wen Kan1, Andy Y Lee, Linda T Nieman, Konstantin Sokolov, Mia K Markey.   

Abstract

We present an approach to adaptively adjust the spectral window sizes for optical spectra feature extraction. Previous studies extracted features from spectral windows of a fixed width. In our algorithm, piecewise linear regression is used to adaptively adjust the window sizes to find the maximum window size with reasonable linear fit with the spectrum. This adaptive windowing technique ensures the signal linearity in defined windows; hence, the adaptive windowing technique retains more diagnostic information while using fewer windows. This method was tested on a data set of diffuse reflectance spectra of oral mucosa lesions. Eight features were extracted from each window. We performed classifications using linear discriminant analysis with cross-validation. Using windowing techniques results in better classification performance than not using windowing. The area under the receiver-operating-characteristics curve for windowing techniques was greater than a nonwindowing technique for both normal versus mild dysplasia (MD) plus severe high-grade dysplasia or carcinama (SD) (MD+SD) and benign versus MD+SD. Although adaptive and fixed-size windowing perform similarly, adaptive windowing utilizes significantly fewer windows than fixed-size windows (number of windows per spectrum: 8 versus 16). Because adaptive windows retain most diagnostic information while reducing the number of windows needed for feature extraction, our results suggest that it isolates unique diagnostic features in optical spectra.

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Year:  2010        PMID: 20799843      PMCID: PMC3188638          DOI: 10.1117/1.3481143

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  30 in total

1.  Detection of preinvasive cancer cells.

Authors:  V Backman; M B Wallace; L T Perelman; J T Arendt; R Gurjar; M G Müller; Q Zhang; G Zonios; E Kline; J A McGilligan; S Shapshay; T Valdez; K Badizadegan; J M Crawford; M Fitzmaurice; S Kabani; H S Levin; M Seiler; R R Dasari; I Itzkan; J Van Dam; M S Feld; T McGillican
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2.  Improving the specificity of fluorescence bronchoscopy for the analysis of neoplastic lesions of the bronchial tree by combination with optical spectroscopy: preliminary communication.

Authors:  Martin P L Bard; Arjen Amelink; Marina Skurichina; Michael den Bakker; Sjaak A Burgers; Jan P van Meerbeeck; Robert P W Duin; Joachim G J V Aerts; Henk C Hoogsteden; Henricus J C M Sterenborg
Journal:  Lung Cancer       Date:  2005-01       Impact factor: 5.705

3.  Perturbation and differential Monte Carlo methods for measurement of optical properties in a layered epithelial tissue model.

Authors:  InSeok Seo; Joon S You; Carole K Hayakawa; Vasan Venugopalan
Journal:  J Biomed Opt       Date:  2007 Jan-Feb       Impact factor: 3.170

4.  Absorption of collagen: effects on the estimate of breast composition and related diagnostic implications.

Authors:  Paola Taroni; Daniela Comelli; Antonio Pifferi; Alessandro Torricelli; Rinaldo Cubeddu
Journal:  J Biomed Opt       Date:  2007 Jan-Feb       Impact factor: 3.170

5.  Polarized wavelength-dependent measurements of turbid media.

Authors:  T Johnson; J Mourant
Journal:  Opt Express       Date:  1999-03-15       Impact factor: 3.894

Review 6.  Optical spectroscopy for detection of neoplasia.

Authors:  Konstantin Sokolov; Michele Follen; Rebecca Richards-Kortum
Journal:  Curr Opin Chem Biol       Date:  2002-10       Impact factor: 8.822

7.  Elastic scattering spectroscopy for the diagnosis of colonic lesions: initial results of a novel optical biopsy technique.

Authors:  Anjan Dhar; Kristie S Johnson; Marco R Novelli; Stephen G Bown; Irving J Bigio; Laurence B Lovat; Stuart L Bloom
Journal:  Gastrointest Endosc       Date:  2006-02       Impact factor: 9.427

8.  Diagnosis of breast cancer using fluorescence and diffuse reflectance spectroscopy: a Monte-Carlo-model-based approach.

Authors:  Changfang Zhu; Gregory M Palmer; Tara M Breslin; Josephine Harter; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2008 May-Jun       Impact factor: 3.170

9.  Cancer statistics, 2009.

Authors:  Ahmedin Jemal; Rebecca Siegel; Elizabeth Ward; Yongping Hao; Jiaquan Xu; Michael J Thun
Journal:  CA Cancer J Clin       Date:  2009-05-27       Impact factor: 508.702

10.  Probing local tissue changes in the oral cavity for early detection of cancer using oblique polarized reflectance spectroscopy: a pilot clinical trial.

Authors:  Linda T Nieman; Chih-Wen Kan; Ann Gillenwater; Mia K Markey; Konstantin Sokolov
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

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