Literature DB >> 20735338

ePPR: a new strategy for the characterization of sensory cells from input/output data.

Joaquín Rapela1, Gidon Felsen, Jon Touryan, Jerry M Mendel, Norberto M Grzywacz.   

Abstract

A central goal of systems neuroscience is to characterize the transformation of sensory input to spiking output in single neurons. This problem is complicated by the large dimensionality of the inputs. To cope with this problem, previous methods have estimated simplified versions of a generic linear-nonlinear (LN) model and required, in most cases, stimuli with constrained statistics. Here we develop the extended Projection Pursuit Regression (ePPR) algorithm that allows the estimation of all of the parameters, in space and time, of a generic LN model using arbitrary stimuli. We first prove that ePPR models can uniformly approximate, to an arbitrary degree of precision, any continuous function. To test this generality empirically, we use ePPR to recover the parameters of models of cortical cells that cannot be represented exactly with an ePPR model. Next we evaluate ePPR with physiological data from primary visual cortex, and show that it can characterize both simple and complex cells, from their responses to both natural and random stimuli. For both simulated and physiological data, we show that ePPR compares favorably to spike-triggered and information-theoretic techniques. To the best of our knowledge, this article contains the first demonstration of a method that allows the estimation of an LN model of visual cells, containing multiple spatio-temporal filters, from their responses to natural stimuli.

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Year:  2010        PMID: 20735338     DOI: 10.3109/0954898X.2010.488714

Source DB:  PubMed          Journal:  Network        ISSN: 0954-898X            Impact factor:   1.273


  8 in total

1.  Characterizing responses of translation-invariant neurons to natural stimuli: maximally informative invariant dimensions.

Authors:  Michael Eickenberg; Ryan J Rowekamp; Minjoon Kouh; Tatyana O Sharpee
Journal:  Neural Comput       Date:  2012-06-26       Impact factor: 2.026

2.  Spatial structure of neuronal receptive field in awake monkey secondary visual cortex (V2).

Authors:  Lu Liu; Liang She; Ming Chen; Tianyi Liu; Haidong D Lu; Yang Dan; Mu-ming Poo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-02       Impact factor: 11.205

Review 3.  Computational identification of receptive fields.

Authors:  Tatyana O Sharpee
Journal:  Annu Rev Neurosci       Date:  2013-07-08       Impact factor: 12.449

4.  Separability of stimulus parameter encoding by on-off directionally selective rabbit retinal ganglion cells.

Authors:  Przemyslaw Nowak; Allan C Dobbins; Timothy J Gawne; Norberto M Grzywacz; Franklin R Amthor
Journal:  J Neurophysiol       Date:  2011-02-16       Impact factor: 2.714

5.  How Stimulus Statistics Affect the Receptive Fields of Cells in Primary Visual Cortex.

Authors:  Ali Almasi; Shi Hai Sun; Molis Yunzab; Young Jun Jung; Hamish Meffin; Michael R Ibbotson
Journal:  J Neurosci       Date:  2022-05-24       Impact factor: 6.709

Review 6.  Analyzing multicomponent receptive fields from neural responses to natural stimuli.

Authors:  Ryan J Rowekamp; Tatyana O Sharpee
Journal:  Network       Date:  2011-07-22       Impact factor: 1.273

7.  The equivalence of information-theoretic and likelihood-based methods for neural dimensionality reduction.

Authors:  Ross S Williamson; Maneesh Sahani; Jonathan W Pillow
Journal:  PLoS Comput Biol       Date:  2015-04-01       Impact factor: 4.475

8.  Inferring Master Painters' Esthetic Biases from the Statistics of Portraits.

Authors:  Hassan Aleem; Ivan Correa-Herran; Norberto M Grzywacz
Journal:  Front Hum Neurosci       Date:  2017-03-09       Impact factor: 3.169

  8 in total

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