Literature DB >> 20729356

Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus.

Kyra Chua1, Torsten Seemann, Paul F Harrison, John K Davies, Scott J Coutts, Honglei Chen, Volker Haring, Robert Moore, Benjamin P Howden, Timothy P Stinear.   

Abstract

Community methicillin-resistant Staphylococcus aureus (cMRSA) is an emerging issue that has resulted in multiple worldwide epidemics. We report the first complete genome sequence of an ST93-MRSA-IV clinical isolate that caused severe invasive infection and a familial outbreak of skin infection. This isolate is a representative of the most common Australian clone of cMRSA that is more distantly related to the previously sequenced genomes of S. aureus.

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Year:  2010        PMID： 20729356      PMCID： PMC2950503          DOI： 10.1128/JB.00878-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  A new generation of homology search tools based on probabilistic inference.

Authors:  Sean R Eddy
Journal:  Genome Inform       Date:  2009-10

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  Prevalence of MRSA strains among Staphylococcus aureus isolated from outpatients, 2006.

Authors:  Geoffrey W Coombs; Graeme R Nimmo; Julie C Pearson; Keryn J Christiansen; Jan M Bell; Peter J Collignon; Mary-Louise McLaws
Journal:  Commun Dis Intell Q Rep       Date:  2009-03

7.  Genetic diversity among community methicillin-resistant Staphylococcus aureus strains causing outpatient infections in Australia.

Authors:  Geoffrey W Coombs; Graeme R Nimmo; Jan M Bell; Flavia Huygens; Frances G O'Brien; Mary J Malkowski; Julie C Pearson; Alex J Stephens; Philip M Giffard
Journal:  J Clin Microbiol       Date:  2004-10       Impact factor: 5.948

8.  SHRiMP: accurate mapping of short color-space reads.

Authors:  Stephen M Rumble; Phil Lacroute; Adrian V Dalca; Marc Fiume; Arend Sidow; Michael Brudno
Journal:  PLoS Comput Biol       Date:  2009-05-22       Impact factor: 4.475

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  24 in total

1.  Examination of the Staphylococcus aureus nitric oxide reductase (saNOR) reveals its contribution to modulating intracellular NO levels and cellular respiration.

Authors:  A M Lewis; S S Matzdorf; J L Endres; I H Windham; K W Bayles; K C Rice
Journal:  Mol Microbiol       Date:  2015-03-16       Impact factor: 3.501

Review 2.  Staphylococcus aureus biofilms: properties, regulation, and roles in human disease.

Authors:  Nathan K Archer; Mark J Mazaitis; J William Costerton; Jeff G Leid; Mary Elizabeth Powers; Mark E Shirtliff
Journal:  Virulence       Date:  2011-09-01       Impact factor: 5.882

3.  A novel point mutation promotes growth phase-dependent daptomycin tolerance in Staphylococcus aureus.

Authors:  Lukas Mechler; Alexander Herbig; Kerstin Paprotka; Martin Fraunholz; Kay Nieselt; Ralph Bertram
Journal:  Antimicrob Agents Chemother       Date:  2015-06-22       Impact factor: 5.191

Review 4.  Evolution of community- and healthcare-associated methicillin-resistant Staphylococcus aureus.

Authors:  Anne-Catrin Uhlemann; Michael Otto; Franklin D Lowy; Frank R DeLeo
Journal:  Infect Genet Evol       Date:  2013-05-03       Impact factor: 3.342

5.  Sequence diversities of serine-aspartate repeat genes among Staphylococcus aureus isolates from different hosts presumably by horizontal gene transfer.

Authors:  Huping Xue; Hong Lu; Xin Zhao
Journal:  PLoS One       Date:  2011-05-20       Impact factor: 3.240

6.  The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct.

Authors:  Kyra Y L Chua; Torsten Seemann; Paul F Harrison; Shaun Monagle; Tony M Korman; Paul D R Johnson; Geoffrey W Coombs; Brian O Howden; John K Davies; Benjamin P Howden; Timothy P Stinear
Journal:  PLoS One       Date:  2011-10-03       Impact factor: 3.240

7.  A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin.

Authors:  Deborah C Holt; Matthew T G Holden; Steven Y C Tong; Santiago Castillo-Ramirez; Louise Clarke; Michael A Quail; Bart J Currie; Julian Parkhill; Stephen D Bentley; Edward J Feil; Philip M Giffard
Journal:  Genome Biol Evol       Date:  2011-08-02       Impact factor: 3.416

8.  Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Authors:  Elizabeth M Driebe; Jason W Sahl; Chandler Roe; Jolene R Bowers; James M Schupp; John D Gillece; Erin Kelley; Lance B Price; Talima R Pearson; Crystal M Hepp; Pius M Brzoska; Craig A Cummings; Manohar R Furtado; Paal S Andersen; Marc Stegger; David M Engelthaler; Paul S Keim
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

9.  The molecular epidemiology of the highly virulent ST93 Australian community Staphylococcus aureus strain.

Authors:  Geoffrey W Coombs; Richard V Goering; Kyra Y L Chua; Stefan Monecke; Benjamin P Howden; Timothy P Stinear; Ralf Ehricht; Frances G O'Brien; Keryn J Christiansen
Journal:  PLoS One       Date:  2012-08-10       Impact factor: 3.240

10.  An approach to identifying drug resistance associated mutations in bacterial strains.

Authors:  Michal Wozniak; Jerzy Tiuryn; Limsoon Wong
Journal:  BMC Genomics       Date:  2012-12-13       Impact factor: 3.969
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