Literature DB >> 20726596

Introduction of jumping fragments in combination with QSARs for the assessment of classification in ecotoxicology.

Sylvain Lozano1, Guillaume Poezevara, Marie-Pierre Halm-Lemeille, Elodie Lescot-Fontaine, Alban Lepailleur, Ryan Bissell-Siders, Bruno Crémilleux, Sylvain Rault, Bertrand Cuissart, Ronan Bureau.   

Abstract

Starting from a random set of structures taken from the European Chemical Bureau (ECB) Web site, an estimation of the classification by acute category in ecotoxicology was carried out. This estimation was based on two approaches. One approach consists in starting with global quantitative structure-activity relationship (QSAR) equations, analyzing the results and defining an interpretation in terms of overall results and mode of action. The other starts with the notion of emerging fragments and more specifically with the introduction of a particular concept: the jumping fragments. This publication studies the scopes and limitations of each approach for the classification of the derivatives. A promising combination of the two methods is proposed for the classification and also for bringing new information about the importance, for the ecotoxicity, of specific chemical fragments considered alone or in association with others.

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Year:  2010        PMID: 20726596     DOI: 10.1021/ci100092x

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  5 in total

1.  Alarms about structural alerts.

Authors:  Vinicius Alves; Eugene Muratov; Stephen Capuzzi; Regina Politi; Yen Low; Rodolpho Braga; Alexey V Zakharov; Alexander Sedykh; Elena Mokshyna; Sherif Farag; Carolina Andrade; Victor Kuz'min; Denis Fourches; Alexander Tropsha
Journal:  Green Chem       Date:  2016-06-28       Impact factor: 10.182

2.  Patient clinical profiles associated with physician non-compliance despite the use of a guideline-based decision support system: a case study with OncoDoc2 using data mining techniques.

Authors:  Brigitte Séroussi; Arnaud Soulet; Nizar Messai; Cédric Laouénan; France Mentré; Jacques Bouaud
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

3.  Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships.

Authors:  Yen S Low; Vinicius M Alves; Denis Fourches; Alexander Sedykh; Carolina Horta Andrade; Eugene N Muratov; Ivan Rusyn; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2018-11-09       Impact factor: 4.956

Review 4.  Automated detection of structural alerts (chemical fragments) in (eco)toxicology.

Authors:  Alban Lepailleur; Guillaume Poezevara; Ronan Bureau
Journal:  Comput Struct Biotechnol J       Date:  2013-04-06       Impact factor: 7.271

5.  Computational approaches to chemical hazard assessment.

Authors:  Thomas Luechtefeld; Thomas Hartung
Journal:  ALTEX       Date:  2017       Impact factor: 6.043

  5 in total

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