Literature DB >> 20725643

ON IDENTIFYING INFORMATION FROM IMAGE-BASED SPATIAL POLARITY PHENOTYPES IN NEUTROPHILS.

Chin-Jen Ku1, Yanqin Wang, Benjamin Pavie, Steven J Altschuler, Lani F Wu.   

Abstract

Cell polarity is involved in many biological functions such as development, wound healing and immune responses. In human neutrophils, polarization is characterized by the translocation of distinct sets of signaling molecules to opposite ends of the cell and the rapid rearrangement of cytoskeleton to initiate migration. While many image-based studies have described cellular morphology and the intensity level of polarity signaling molecules, systematic characterization of the spatial distribution of polarity signaling molecules has been lacking. Here we designed a collection of analytical features to quantify spatial phenotypes of polarity molecules. We compared our features to commonly used polarity readouts and found that they captured additional aspects of the polarization dynamics that were not contained in the existing features. Our work provides a starting point to identify informative features for the study of neutrophil polarization.

Entities:  

Year:  2010        PMID: 20725643      PMCID: PMC2921656          DOI: 10.1109/ISBI.2010.5490165

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

1.  After sequencing: quantitative analysis of protein localization.

Authors:  M V Boland; R F Murphy
Journal:  IEEE Eng Med Biol Mag       Date:  1999 Sep-Oct

2.  Divergent signals and cytoskeletal assemblies regulate self-organizing polarity in neutrophils.

Authors:  Jingsong Xu; Fei Wang; Alexandra Van Keymeulen; Paul Herzmark; Aaron Straight; Kathleen Kelly; Yoh Takuwa; Naotoshi Sugimoto; Timothy Mitchison; Henry R Bourne
Journal:  Cell       Date:  2003-07-25       Impact factor: 41.582

3.  A local coupling model and compass parameter for eukaryotic chemotaxis.

Authors:  Cécile Arrieumerlou; Tobias Meyer
Journal:  Dev Cell       Date:  2005-02       Impact factor: 12.270

4.  Quantitative imaging of lymphocyte membrane protein reorganization and signaling.

Authors:  Peter M Kasson; Johannes B Huppa; Michelle Krogsgaard; Mark M Davis; Axel T Brunger
Journal:  Biophys J       Date:  2004-10-22       Impact factor: 4.033

5.  Chemotaxis in shallow gradients is mediated independently of PtdIns 3-kinase by biased choices between random protrusions.

Authors:  Natalie Andrew; Robert H Insall
Journal:  Nat Cell Biol       Date:  2007-01-14       Impact factor: 28.824

6.  Image-based multivariate profiling of drug responses from single cells.

Authors:  Lit-Hsin Loo; Lani F Wu; Steven J Altschuler
Journal:  Nat Methods       Date:  2007-04-01       Impact factor: 28.547

7.  Neutrophil polarization: spatiotemporal dynamics of RhoA activity support a self-organizing mechanism.

Authors:  Kit Wong; Olivier Pertz; Klaus Hahn; Henry Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-28       Impact factor: 11.205

8.  Isolation of mononuclear cells and granulocytes from human blood. Isolation of monuclear cells by one centrifugation, and of granulocytes by combining centrifugation and sedimentation at 1 g.

Authors:  A Böyum
Journal:  Scand J Clin Lab Invest Suppl       Date:  1968

9.  Hem-1 complexes are essential for Rac activation, actin polymerization, and myosin regulation during neutrophil chemotaxis.

Authors:  Orion D Weiner; Maike C Rentel; Alex Ott; Glenn E Brown; Mark Jedrychowski; Michael B Yaffe; Steven P Gygi; Lewis C Cantley; Henry R Bourne; Marc W Kirschner
Journal:  PLoS Biol       Date:  2006-01-24       Impact factor: 8.029

10.  G protein-independent Ras/PI3K/F-actin circuit regulates basic cell motility.

Authors:  Atsuo T Sasaki; Chris Janetopoulos; Susan Lee; Pascale G Charest; Kosuke Takeda; Lauren W Sundheimer; Ruedi Meili; Peter N Devreotes; Richard A Firtel
Journal:  J Cell Biol       Date:  2007-07-16       Impact factor: 10.539

View more
  5 in total

1.  Network crosstalk dynamically changes during neutrophil polarization.

Authors:  Chin-Jen Ku; Yanqin Wang; Orion D Weiner; Steven J Altschuler; Lani F Wu
Journal:  Cell       Date:  2012-05-25       Impact factor: 41.582

2.  Identifying network motifs that buffer front-to-back signaling in polarized neutrophils.

Authors:  Yanqin Wang; Chin-Jen Ku; Elizabeth R Zhang; Alexander B Artyukhin; Orion D Weiner; Lani F Wu; Steven J Altschuler
Journal:  Cell Rep       Date:  2013-05-09       Impact factor: 9.423

3.  PHOCOS: inferring multi-feature phenotypic crosstalk networks.

Authors:  Yue Deng; Steven J Altschuler; Lani F Wu
Journal:  Bioinformatics       Date:  2016-06-15       Impact factor: 6.937

4.  Inhomogeneity Based Characterization of Distribution Patterns on the Plasma Membrane.

Authors:  Laura Paparelli; Nikky Corthout; Benjamin Pavie; Devin L Wakefield; Ragna Sannerud; Tijana Jovanovic-Talisman; Wim Annaert; Sebastian Munck
Journal:  PLoS Comput Biol       Date:  2016-09-07       Impact factor: 4.475

5.  Simulated actin reorganization mediated by motor proteins.

Authors:  Maria-Veronica Ciocanel; Aravind Chandrasekaran; Carli Mager; Qin Ni; Garegin A Papoian; Adriana Dawes
Journal:  PLoS Comput Biol       Date:  2022-04-07       Impact factor: 4.779

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.