Literature DB >> 20715607

Revealing ecological networks using Bayesian network inference algorithms.

Isobel Milns1, Colin M Beale, V Anne Smith.   

Abstract

Understanding functional relationships within ecological networks can help reveal keys to ecosystem stability or fragility. Revealing these relationships is complicated by the difficulties of isolating variables or performing experimental manipulations within a natural ecosystem, and thus inferences are often made by matching models to observational data. Such models, however, require assumptions-or detailed measurements-of parameters such as birth and death rate, encounter frequency, territorial exclusion, and predation success. Here, we evaluate the use of a Bayesian network inference algorithm, which can reveal ecological networks based upon species and habitat abundance alone. We test the algorithm's performance and applicability on observational data of avian communities and habitat in the Peak District National Park, United Kingdom. The resulting networks correctly reveal known relationships among habitat types and known interspecific relationships. In addition, the networks produced novel insights into ecosystem structure and identified key species with high connectivity. Thus, Bayesian networks show potential for becoming a valuable tool in ecosystem analysis.

Mesh:

Year:  2010        PMID: 20715607     DOI: 10.1890/09-0731.1

Source DB:  PubMed          Journal:  Ecology        ISSN: 0012-9658            Impact factor:   5.499


  15 in total

Review 1.  Incorporating uncertainty in predictive species distribution modelling.

Authors:  Colin M Beale; Jack J Lennon
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-01-19       Impact factor: 6.237

Review 2.  Microbial interactions: from networks to models.

Authors:  Karoline Faust; Jeroen Raes
Journal:  Nat Rev Microbiol       Date:  2012-07-16       Impact factor: 60.633

3.  Network modeling of the transcriptional effects of copy number aberrations in glioblastoma.

Authors:  Rebecka Jörnsten; Tobias Abenius; Teresia Kling; Linnéa Schmidt; Erik Johansson; Torbjörn E M Nordling; Bodil Nordlander; Chris Sander; Peter Gennemark; Keiko Funa; Björn Nilsson; Linda Lindahl; Sven Nelander
Journal:  Mol Syst Biol       Date:  2011-04-26       Impact factor: 11.429

4.  Practical application of a Bayesian network approach to poultry epigenetics and stress.

Authors:  Emiliano A Videla Rodriguez; Fábio Pértille; Carlos Guerrero-Bosagna; John B O Mitchell; Per Jensen; V Anne Smith
Journal:  BMC Bioinformatics       Date:  2022-07-01       Impact factor: 3.307

5.  Revealing the complexity of health determinants in resource-poor settings.

Authors:  Fraser I Lewis; Benjamin J J McCormick
Journal:  Am J Epidemiol       Date:  2012-11-08       Impact factor: 4.897

6.  FORUM: Ecological networks: the missing links in biomonitoring science.

Authors:  Clare Gray; Donald J Baird; Simone Baumgartner; Ute Jacob; Gareth B Jenkins; Eoin J O'Gorman; Xueke Lu; Athen Ma; Michael J O Pocock; Nele Schuwirth; Murray Thompson; Guy Woodward
Journal:  J Appl Ecol       Date:  2014-07-28       Impact factor: 6.528

7.  Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks.

Authors:  Michael J McGeachie; Joanne E Sordillo; Travis Gibson; George M Weinstock; Yang-Yu Liu; Diane R Gold; Scott T Weiss; Augusto Litonjua
Journal:  Sci Rep       Date:  2016-02-08       Impact factor: 4.379

8.  Community structure informs species geographic distributions.

Authors:  Alicia Montesinos-Navarro; Alba Estrada; Xavier Font; Miguel G Matias; Catarina Meireles; Manuel Mendoza; Joao P Honrado; Hari D Prasad; Joana R Vicente; Regan Early
Journal:  PLoS One       Date:  2018-05-23       Impact factor: 3.240

9.  Improving epidemiologic data analyses through multivariate regression modelling.

Authors:  Fraser I Lewis; Michael P Ward
Journal:  Emerg Themes Epidemiol       Date:  2013-05-17

10.  Ecological Network Inference From Long-Term Presence-Absence Data.

Authors:  Elizabeth L Sander; J Timothy Wootton; Stefano Allesina
Journal:  Sci Rep       Date:  2017-08-02       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.