Literature DB >> 20713128

Mathematical modeling of microtubule dynamics: insights into physiology and disease.

Gavin A Buxton1, Sandra L Siedlak, George Perry, Mark A Smith.   

Abstract

Computer models of microtubule dynamics have provided the basis for many of the theories on the cellular mechanics of the microtubules, their polymerization kinetics, and the diffusion of tubulin and tau. In the three-dimensional model presented here, we include the effects of tau concentration and the hydrolysis of GTP-tubulin to GDP-tubulin and observe the emergence of microtubule dynamic instability. This integrated approach simulates the essential physics of microtubule dynamics in a cellular environment. The model captures the structure of the microtubules as they undergo steady state dynamic instabilities in this simplified geometry, and also yields the average number, length, and cap size of the microtubules. The model achieves realistic geometries and simulates cellular structures found in degenerating neurons in disease states such as Alzheimer disease. Further, this model can be used to simulate microtubule changes following the addition of antimitotic drugs which have recently attracted attention as chemotherapeutic agents.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20713128      PMCID: PMC2991630          DOI: 10.1016/j.pneurobio.2010.08.003

Source DB:  PubMed          Journal:  Prog Neurobiol        ISSN: 0301-0082            Impact factor:   11.685


  36 in total

1.  Microtubule reduction in Alzheimer's disease and aging is independent of tau filament formation.

Authors:  Adam D Cash; Gjumrakch Aliev; Sandra L Siedlak; Akihiko Nunomura; Hisashi Fujioka; Xiongwei Zhu; Arun K Raina; Harry V Vinters; Massimo Tabaton; Anne B Johnson; Manuel Paula-Barbosa; Jesus Avíla; Paul K Jones; Rudy J Castellani; Mark A Smith; George Perry
Journal:  Am J Pathol       Date:  2003-05       Impact factor: 4.307

2.  Centrosome maturation: measurement of microtubule nucleation throughout the cell cycle by using GFP-tagged EB1.

Authors:  Michelle Piehl; U Serdar Tulu; Pat Wadsworth; Lynne Cassimeris
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-27       Impact factor: 11.205

Review 3.  Microtubules as a target for anticancer drugs.

Authors:  Mary Ann Jordan; Leslie Wilson
Journal:  Nat Rev Cancer       Date:  2004-04       Impact factor: 60.716

4.  Dynamic instability of microtubules: effect of catastrophe-suppressing drugs.

Authors:  Pankaj Kumar Mishra; Ambarish Kunwar; Sutapa Mukherji; Debashish Chowdhury
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-11-09

5.  A theory of microtubule catastrophes and their regulation.

Authors:  Ludovic Brun; Beat Rupp; Jonathan J Ward; François Nédélec
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-30       Impact factor: 11.205

6.  Continuous model for microtubule dynamics with catastrophe, rescue, and nucleation processes.

Authors:  Peter Hinow; Vahid Rezania; Jack A Tuszyński
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-11

Review 7.  Advanced Maillard reaction end products, free radicals, and protein oxidation in Alzheimer's disease.

Authors:  M A Smith; P L Richey; S Taneda; R K Kutty; L M Sayre; V M Monnier; G Perry
Journal:  Ann N Y Acad Sci       Date:  1994-11-17       Impact factor: 5.691

8.  Widespread peroxynitrite-mediated damage in Alzheimer's disease.

Authors:  M A Smith; P L Richey Harris; L M Sayre; J S Beckman; G Perry
Journal:  J Neurosci       Date:  1997-04-15       Impact factor: 6.167

9.  Tau--an inhibitor of deacetylase HDAC6 function.

Authors:  Mar Perez; Ismael Santa-Maria; Elena Gomez de Barreda; Xiongwei Zhu; Raquel Cuadros; Jose Roman Cabrero; Francisco Sanchez-Madrid; Hana N Dawson; Michael P Vitek; George Perry; Mark A Smith; Jesus Avila
Journal:  J Neurochem       Date:  2009-05-07       Impact factor: 5.372

10.  Microtubule-dependent oligomerization of tau. Implications for physiological tau function and tauopathies.

Authors:  Victoria Makrides; Ting E Shen; Rajinder Bhatia; Bettye L Smith; Julian Thimm; Ratneshwar Lal; Stuart C Feinstein
Journal:  J Biol Chem       Date:  2003-06-12       Impact factor: 5.157

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  5 in total

1.  Circovirus transport proceeds via direct interaction of the cytoplasmic dynein IC1 subunit with the viral capsid protein.

Authors:  Jingjing Cao; Cui Lin; Huijuan Wang; Lun Wang; Niu Zhou; Yulan Jin; Min Liao; Jiyong Zhou
Journal:  J Virol       Date:  2014-12-24       Impact factor: 5.103

2.  How morphological constraints affect axonal polarity in mouse neurons.

Authors:  Sophie Roth; Mariano Bisbal; Jacques Brocard; Ghislain Bugnicourt; Yasmina Saoudi; Annie Andrieux; Sylvie Gory-Fauré; Catherine Villard
Journal:  PLoS One       Date:  2012-03-21       Impact factor: 3.240

3.  Nerve growth factor induces neurite outgrowth of PC12 cells by promoting Gβγ-microtubule interaction.

Authors:  Jorge A Sierra-Fonseca; Omar Najera; Jessica Martinez-Jurado; Ellen M Walker; Armando Varela-Ramirez; Arshad M Khan; Manuel Miranda; Nazarius S Lamango; Sukla Roychowdhury
Journal:  BMC Neurosci       Date:  2014-12-31       Impact factor: 3.288

4.  The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues.

Authors:  Vincent Mirabet; Pawel Krupinski; Olivier Hamant; Elliot M Meyerowitz; Henrik Jönsson; Arezki Boudaoud
Journal:  PLoS Comput Biol       Date:  2018-02-20       Impact factor: 4.475

Review 5.  Computational modeling of single-cell mechanics and cytoskeletal mechanobiology.

Authors:  Vijay Rajagopal; William R Holmes; Peter Vee Sin Lee
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-11-30
  5 in total

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