Literature DB >> 20712990

A molecular dynamics investigation of vinculin activation.

Javad Golji1, Mohammad R K Mofrad.   

Abstract

Vinculin activation plays a critical role in focal adhesion initiation and formation. In its native state, vinculin is in an autoinhibitory conformation in which domain 1 prevents interaction of the vinculin tail domain with actin by steric hindrance. Once activated, vinculin is able to interact with both actin and talin. Several hypotheses have been put forth addressing the mechanisms of vinculin activation. One set of studies suggests that vinculin interaction with talin is sufficient to cause activation, whereas another set of studies suggests that a simultaneous interaction with several binding partners is necessary to achieve vinculin activation. Using molecular-dynamics (MD) simulations, we investigate the mechanisms of vinculin activation and suggest both a trajectory of conformational changes leading to vinculin activation, and key structural features that are likely involved in stabilizing the autoinhibited conformation. Assuming that the simultaneous interaction of vinculin with both actin and talin causes a stretching force on vinculin, and that vinculin activation results from a removal of steric hindrance blocking the actin-binding sites, we simulate with MD the stretching and activation of vinculin. The MD simulations are further confirmed by normal-mode analysis and simulation after residue modification. Taken together, the results of these simulations suggest that bending of the vinculin-binding-site region in vinculin away from the vinculin tail is the likely trajectory of vinculin activation. 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20712990      PMCID: PMC2920635          DOI: 10.1016/j.bpj.2010.05.024

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  65 in total

1.  Further characterization of the interaction between the cytoskeletal proteins talin and vinculin.

Authors:  Mark D Bass; Bipin Patel; Igor G Barsukov; Ian J Fillingham; Robert Mason; Beverley J Smith; Clive R Bagshaw; David R Critchley
Journal:  Biochem J       Date:  2002-03-15       Impact factor: 3.857

Review 2.  Molecular dynamics simulations of biomolecules.

Authors:  Martin Karplus; J Andrew McCammon
Journal:  Nat Struct Biol       Date:  2002-09

3.  Force-induced unfolding of the focal adhesion targeting domain and the influence of paxillin binding.

Authors:  M R Kaazempur Mofrad; J Golji; N A Abdul Rahim; R D Kamm
Journal:  Mech Chem Biosyst       Date:  2004-12

4.  Three-dimensional structure of vinculin bound to actin filaments.

Authors:  Mandy E W Janssen; Eldar Kim; Hongjun Liu; L Miya Fujimoto; Andrey Bobkov; Niels Volkmann; Dorit Hanein
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

5.  Mechano-coupling and regulation of contractility by the vinculin tail domain.

Authors:  Claudia Tanja Mierke; Philip Kollmannsberger; Daniel Paranhos Zitterbart; James Smith; Ben Fabry; Wolfgang Heinrich Goldmann
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

Review 6.  Mechanotransduction gone awry.

Authors:  Diana E Jaalouk; Jan Lammerding
Journal:  Nat Rev Mol Cell Biol       Date:  2009-01       Impact factor: 94.444

7.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

8.  WEBnm@: a web application for normal mode analyses of proteins.

Authors:  Siv Midtun Hollup; Gisle Salensminde; Nathalie Reuter
Journal:  BMC Bioinformatics       Date:  2005-03-11       Impact factor: 3.169

9.  Recruitment of the Arp2/3 complex to vinculin: coupling membrane protrusion to matrix adhesion.

Authors:  Kris A DeMali; Christy A Barlow; Keith Burridge
Journal:  J Cell Biol       Date:  2002-12-09       Impact factor: 10.539

10.  Role of vinculin in regulating focal adhesion turnover.

Authors:  Ruth M Saunders; Mark R Holt; Lisa Jennings; Deborah H Sutton; Igor L Barsukov; Andrey Bobkov; Robert C Liddington; Eileen A Adamson; Graham A Dunn; David R Critchley
Journal:  Eur J Cell Biol       Date:  2006-04-03       Impact factor: 4.492

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  25 in total

1.  On the activation of integrin αIIbβ3: outside-in and inside-out pathways.

Authors:  Mehrdad Mehrbod; Stephen Trisno; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

2.  The talin dimer structure orientation is mechanically regulated.

Authors:  Javad Golji; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 3.  Molecular stretching modulates mechanosensing pathways.

Authors:  Xian Hu; Felix Martin Margadant; Mingxi Yao; Michael Patrick Sheetz
Journal:  Protein Sci       Date:  2017-06-06       Impact factor: 6.725

4.  Vinculin phosphorylation at Tyr1065 regulates vinculin conformation and tension development in airway smooth muscle tissues.

Authors:  Youliang Huang; Richard N Day; Susan J Gunst
Journal:  J Biol Chem       Date:  2013-12-13       Impact factor: 5.157

5.  Phosphorylation primes vinculin for activation.

Authors:  Javad Golji; Timothy Wendorff; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

6.  Kindlin Is Mechanosensitive: Force-Induced Conformational Switch Mediates Cross-Talk among Integrins.

Authors:  Zeinab Jahed; Zainab Haydari; Akshay Rathish; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2019-02-07       Impact factor: 4.033

7.  Mechanosensitive Conformation of Vinculin Regulates Its Binding to MAPK1.

Authors:  Kiavash Garakani; Hengameh Shams; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

8.  Molecular Simulations Suggest a Force-Dependent Mechanism of Vinculin Activation.

Authors:  Li Sun; Jeffrey K Noel; Herbert Levine; José N Onuchic
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

9.  Regulation of matrix assembly through rigidity-dependent fibronectin conformational changes.

Authors:  Cara L Carraher; Jean E Schwarzbauer
Journal:  J Biol Chem       Date:  2013-04-15       Impact factor: 5.157

10.  A molecular trajectory of α-actinin activation.

Authors:  Hengameh Shams; Javad Golji; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

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