Literature DB >> 20708614

Insights into the genomic features and evolutionary impact of the genes configuring duplicated pseudogenes in human.

Kamalika Sen1, Soumita Podder, Tapash Chandra Ghosh.   

Abstract

Pseudogenes, regarded as 'genomic fossils', are DNA sequences resembling functional genes in perspective of sequence homology but completely non-functional. In this study, we explored the unique characteristic features of human genes, configuring classical duplicated pseudogenes. We found that progenitors of duplicated pseudogenes are characterized by a high expressivity, and ability to encode hub-proteins in association with a high evolutionary rate. Such unusual features are endorsed by longer protein length, elevated CpG content, and a high recombination rate. The non-functionalization of their duplicated copies can be attributed to the overabundance of gene paralog number in concert with functional redundancy.
Copyright © 2010 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20708614     DOI: 10.1016/j.febslet.2010.08.012

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  8 in total

1.  Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo.

Authors:  Sergio Branciamore; Andrei S Rodin; Arthur D Riggs; Sergei N Rodin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

2.  Pseudogenes: Four Decades of Discovery.

Authors:  Leonardo Salmena
Journal:  Methods Mol Biol       Date:  2021

3.  The CLRX.1/NOD24 (NLRP2P) pseudogene codes a functional negative regulator of NF-κB, pyrin-only protein 4.

Authors:  K A Porter; E B Duffy; P Nyland; M K Atianand; H Sharifi; J A Harton
Journal:  Genes Immun       Date:  2014-05-29       Impact factor: 2.676

4.  Genome-wide survey of pseudogenes in 80 fully re-sequenced Arabidopsis thaliana accessions.

Authors:  Long Wang; Weina Si; Yongfang Yao; Dacheng Tian; Hitoshi Araki; Sihai Yang
Journal:  PLoS One       Date:  2012-12-13       Impact factor: 3.240

5.  On the quest for selective constraints shaping the expressivity of the genes casting retropseudogenes in human.

Authors:  Kamalika Sen; Soumita Podder; Tapash C Ghosh
Journal:  BMC Genomics       Date:  2011-08-08       Impact factor: 3.969

6.  Evolutionary dynamics of human autoimmune disease genes and malfunctioned immunological genes.

Authors:  Soumita Podder; Tapash Chandra Ghosh
Journal:  BMC Evol Biol       Date:  2012-01-25       Impact factor: 3.260

7.  Transcriptional activity and strain-specific history of mouse pseudogenes.

Authors:  Cristina Sisu; Paul Muir; Adam Frankish; Ian Fiddes; Mark Diekhans; David Thybert; Duncan T Odom; Paul Flicek; Thomas M Keane; Tim Hubbard; Jennifer Harrow; Mark Gerstein
Journal:  Nat Commun       Date:  2020-07-29       Impact factor: 14.919

8.  Lack of CpG islands in human unitary pseudogenes and its implication.

Authors:  Ammad Aslam Khan; Muhammad Shahryar Ali; Farah Babar; Anees Fatima; Muhammad Awais Shafqat; Bisma Asghar; Nimra Ilyas; Maheen Fatima; Ayesha Liaqat; Muhammad Aslam Gondal
Journal:  Mamm Genome       Date:  2021-07-16       Impact factor: 2.957

  8 in total

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