Literature DB >> 20707934

Environmental exposures and mutational patterns of cancer genomes.

Gerd P Pfeifer1.   

Abstract

The etiology of most human cancers is unknown. Genetic inheritance and environmental factors are thought to have major roles, and for some types of cancer, exposure to carcinogens is a proven mechanism leading to tumorigenesis. Sequencing of entire cancer genomes has not only begun to provide clues regarding functionally relevant mutations, but has also paved the way towards understanding the initial exposures leading to DNA damage, repair and eventually to mutation of specific sequences within a cancer genome. Two recent studies of melanoma and small cell lung cancer exemplify what type of information can be gained from cancer genome sequencing.

Entities:  

Year:  2010        PMID: 20707934      PMCID: PMC2945011          DOI: 10.1186/gm175

Source DB:  PubMed          Journal:  Genome Med        ISSN: 1756-994X            Impact factor:   11.117


  14 in total

Review 1.  p53 and human cancer: the first ten thousand mutations.

Authors:  P Hainaut; M Hollstein
Journal:  Adv Cancer Res       Date:  2000       Impact factor: 6.242

Review 2.  Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers.

Authors:  Gerd P Pfeifer; Mikhail F Denissenko; Magali Olivier; Natalia Tretyakova; Stephen S Hecht; Pierre Hainaut
Journal:  Oncogene       Date:  2002-10-21       Impact factor: 9.867

3.  Environmental and heritable factors in the causation of cancer--analyses of cohorts of twins from Sweden, Denmark, and Finland.

Authors:  P Lichtenstein; N V Holm; P K Verkasalo; A Iliadou; J Kaprio; M Koskenvuo; E Pukkala; A Skytthe; K Hemminki
Journal:  N Engl J Med       Date:  2000-07-13       Impact factor: 91.245

Review 4.  Tobacco smoke carcinogens and lung cancer.

Authors:  S S Hecht
Journal:  J Natl Cancer Inst       Date:  1999-07-21       Impact factor: 13.506

Review 5.  Mutations induced by ultraviolet light.

Authors:  Gerd P Pfeifer; Young-Hyun You; Ahmad Besaratinia
Journal:  Mutat Res       Date:  2005-01-20       Impact factor: 2.433

6.  A comprehensive catalogue of somatic mutations from a human cancer genome.

Authors:  Erin D Pleasance; R Keira Cheetham; Philip J Stephens; David J McBride; Sean J Humphray; Chris D Greenman; Ignacio Varela; Meng-Lay Lin; Gonzalo R Ordóñez; Graham R Bignell; Kai Ye; Julie Alipaz; Markus J Bauer; David Beare; Adam Butler; Richard J Carter; Lina Chen; Anthony J Cox; Sarah Edkins; Paula I Kokko-Gonzales; Niall A Gormley; Russell J Grocock; Christian D Haudenschild; Matthew M Hims; Terena James; Mingming Jia; Zoya Kingsbury; Catherine Leroy; John Marshall; Andrew Menzies; Laura J Mudie; Zemin Ning; Tom Royce; Ole B Schulz-Trieglaff; Anastassia Spiridou; Lucy A Stebbings; Lukasz Szajkowski; Jon Teague; David Williamson; Lynda Chin; Mark T Ross; Peter J Campbell; David R Bentley; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

Review 7.  Epidemiology of melanoma and nonmelanoma skin cancer--the role of sunlight.

Authors:  Ulrike Leiter; Claus Garbe
Journal:  Adv Exp Med Biol       Date:  2008       Impact factor: 2.622

8.  A role for sunlight in skin cancer: UV-induced p53 mutations in squamous cell carcinoma.

Authors:  D E Brash; J A Rudolph; J A Simon; A Lin; G J McKenna; H P Baden; A J Halperin; J Pontén
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-15       Impact factor: 11.205

9.  Molecular epidemiology of human cancer: contribution of mutation spectra studies of tumor suppressor genes.

Authors:  S P Hussain; C C Harris
Journal:  Cancer Res       Date:  1998-09-15       Impact factor: 12.701

10.  A small-cell lung cancer genome with complex signatures of tobacco exposure.

Authors:  Erin D Pleasance; Philip J Stephens; Sarah O'Meara; David J McBride; Alison Meynert; David Jones; Meng-Lay Lin; David Beare; King Wai Lau; Chris Greenman; Ignacio Varela; Serena Nik-Zainal; Helen R Davies; Gonzalo R Ordoñez; Laura J Mudie; Calli Latimer; Sarah Edkins; Lucy Stebbings; Lina Chen; Mingming Jia; Catherine Leroy; John Marshall; Andrew Menzies; Adam Butler; Jon W Teague; Jonathon Mangion; Yongming A Sun; Stephen F McLaughlin; Heather E Peckham; Eric F Tsung; Gina L Costa; Clarence C Lee; John D Minna; Adi Gazdar; Ewan Birney; Michael D Rhodes; Kevin J McKernan; Michael R Stratton; P Andrew Futreal; Peter J Campbell
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

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  31 in total

Review 1.  Clinical utility of tumor mutational burden in patients with non-small cell lung cancer treated with immunotherapy.

Authors:  Lizza E Hendriks; Etienne Rouleau; Benjamin Besse
Journal:  Transl Lung Cancer Res       Date:  2018-12

Review 2.  UV wavelength-dependent DNA damage and human non-melanoma and melanoma skin cancer.

Authors:  Gerd P Pfeifer; Ahmad Besaratinia
Journal:  Photochem Photobiol Sci       Date:  2011-08-01       Impact factor: 3.982

Review 3.  Computational approaches for discovery of mutational signatures in cancer.

Authors:  Adrian Baez-Ortega; Kevin Gori
Journal:  Brief Bioinform       Date:  2019-01-18       Impact factor: 11.622

4.  Prostate cancer risk and aggressiveness associated with the CYP1B1 4326C/G (Leu432Val) polymorphism: a meta-analysis of 2788 cases and 2968 controls.

Authors:  Jie Yang; Dong-Liang Xu; Qiang Lu; Zhi-Jian Han; Jun Tao; Pei Lu; Chao Wang; Xiao-Ke Di; Min Gu
Journal:  Asian J Androl       Date:  2012-04-16       Impact factor: 3.285

5.  Modeling clinical and molecular covariates of mutational process activity in cancer.

Authors:  Welles Robinson; Roded Sharan; Mark D M Leiserson
Journal:  Bioinformatics       Date:  2019-07-15       Impact factor: 6.937

Review 6.  Targeting the cancer epigenome for therapy.

Authors:  Peter A Jones; Jean-Pierre J Issa; Stephen Baylin
Journal:  Nat Rev Genet       Date:  2016-09-15       Impact factor: 53.242

7.  The risks, degree of malignancy and clinical progression of prostate cancer associated with the MDM2 T309G polymorphism: a meta-analysis.

Authors:  Jie Yang; Wen Gao; Ning-Hong Song; Wei Wang; Jie-Xiu Zhang; Pei Lu; Li-Xin Hua; Min Gu
Journal:  Asian J Androl       Date:  2012-08-20       Impact factor: 3.285

8.  Into the eye of the storm: breast cancer's somatic mutation landscape points to DNA damage and repair.

Authors:  Joanne Ngeow; Emily Nizialek; Charis Eng
Journal:  Transl Cancer Res       Date:  2013-04       Impact factor: 1.241

9.  Formation of cyclobutane pyrimidine dimers at dipyrimidines containing 5-hydroxymethylcytosine.

Authors:  Sang-in Kim; Seung-Gi Jin; Gerd P Pfeifer
Journal:  Photochem Photobiol Sci       Date:  2013-08       Impact factor: 3.982

10.  Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring.

Authors:  Chao Jiang; Xin Wang; Xiyan Li; Jingga Inlora; Ting Wang; Qing Liu; Michael Snyder
Journal:  Cell       Date:  2018-09-20       Impact factor: 41.582

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