Literature DB >> 20707549

Solubilization of aromatic and hydrophobic moieties by arginine in aqueous solutions.

Jianguo Li1, Manju Garg, Dhawal Shah, Raj Rajagopalan.   

Abstract

Experiments hold intriguing, circumstantial clues to the mechanisms behind arginine-mediated solubilization of small organic drugs and suppression of protein aggregation driven by hydrophobic or aromatic associations, but how exactly arginine's molecular structure and interactions contribute to its function remains unclear since attention has focused so far on the thermodynamics of the preferential exclusion or binding of arginine. Here, we examine, through molecular dynamics simulations, how arginine solubilizes nanoscale particles with hydrophobic surfaces or aromatic-ring-type surface interactions. We show that preferential, hydrophobic, and dispersion interactions of arginine's guanidinium group with the particles lead to a surfactant-like behavior of arginine around the particles and to a solvation layer with a protective polar mask creating a hydrophilic shell. Additionally, arginine-arginine association around the solvation layer further prevents aggregative contacts. The results shed some light on the mechanistic basis of arginine's function as a suppressant of protein aggregation, although the complex energy landscapes and kinetic pathways of aggregation are protein-dependent and pose formidable challenges to developing comprehensive mechanistic pictures. Our results suggest arginine's mode of interaction with hydrophobic patches and aromatic residues could reduce aggregation-prone intermediate states of proteins and shield protein-protein aggregative contacts. The approach used here offers a systematic way of exploring implications of other amino acid/excipient interactions by studying interactions of the excipient with particles grafted with amino acids.

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Year:  2010        PMID: 20707549     DOI: 10.1063/1.3469790

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Insert engineering and solubility screening improves recovery of virus-like particle subunits displaying hydrophobic epitopes.

Authors:  R S Abidin; L H L Lua; A P J Middelberg; F Sainsbury
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

2.  Arginine refolds, stabilizes, and restores function of mutant pVHL proteins in animal model of the VHL cancer syndrome.

Authors:  Merav D Shmueli; Limor Levy-Kanfo; Esraa Haj; Alan R Schoenfeld; Ehud Gazit; Daniel Segal
Journal:  Oncogene       Date:  2018-09-07       Impact factor: 9.867

3.  Progressive structuring of a branched antimicrobial peptide on the path to the inner membrane target.

Authors:  Yang Bai; Shouping Liu; Jianguo Li; Rajamani Lakshminarayanan; Padmanabhan Sarawathi; Charles Tang; Duncun Ho; Chandra Verma; Roger W Beuerman; Konstantin Pervushin
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

4.  Structure-activity relations of myxinidin, an antibacterial peptide derived from the epidermal mucus of hagfish.

Authors:  Marco Cantisani; Marilisa Leone; Eleonora Mignogna; Katerina Kampanaraki; Annarita Falanga; Giancarlo Morelli; Massimiliano Galdiero; Stefania Galdiero
Journal:  Antimicrob Agents Chemother       Date:  2013-09-03       Impact factor: 5.191

5.  Aspergillus niger β-glucosidase has a cellulase-like tadpole molecular shape: insights into glycoside hydrolase family 3 (GH3) β-glucosidase structure and function.

Authors:  Marisa A Lima; Mario Oliveira-Neto; Marco Antonio S Kadowaki; Flavio R Rosseto; Erica T Prates; Fabio M Squina; Adriana F P Leme; Munir S Skaf; Igor Polikarpov
Journal:  J Biol Chem       Date:  2013-09-24       Impact factor: 5.157

Review 6.  Viscosity Control of Protein Solution by Small Solutes: A Review.

Authors:  Taehun Hong; Kazuki Iwashita; Kentaro Shiraki
Journal:  Curr Protein Pept Sci       Date:  2018       Impact factor: 3.272

7.  Dissecting the Supramolecular Dispersion of Fullerenes by Proteins/Peptides: Amino Acid Ranking and Driving Forces for Binding to C60.

Authors:  Tainah Dorina Marforio; Alessandro Calza; Edoardo Jun Mattioli; Francesco Zerbetto; Matteo Calvaresi
Journal:  Int J Mol Sci       Date:  2021-10-26       Impact factor: 5.923

8.  Structural insights into the folding defects of oncogenic pVHL lead to correction of its function in vitro.

Authors:  Merav D Shmueli; Lee Schnaider; Daniel Rosenblum; Gal Herzog; Ehud Gazit; Daniel Segal
Journal:  PLoS One       Date:  2013-06-20       Impact factor: 3.240

9.  Molecular computations of preferential interactions of proline, arginine.HCl, and NaCl with IgG1 antibodies and their impact on aggregation and viscosity.

Authors:  Theresa K Cloutier; Chaitanya Sudrik; Neil Mody; Sathish A Hasige; Bernhardt L Trout
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

  9 in total

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