BACKGROUND: The human Vasoactive Intestinal Peptide (VIP) is a neurokine with effects on the immune system where it is involved in promoting tolerance. In this context, one of its receptors, VPAC1, has been found to be down-modulated in cells of the immune network in response to activating stimuli. In particular, the bacterial liposaccharide (LPS), a strong activator of the innate immune system, induces a rapid decrease of VPAC1 expression in monocytes and this event correlates with polymorphisms in the 3'-UTR of the gene. METHODOLOGY/PRINCIPAL FINDINGS: MicroRNA 525-5p, having as putative target the 3'-UTR region of VPAC1, has been analysed for its expression in monocytes and for its role in down-modulating VPAC1 expression. We report here that miR-525-5p is promptly up-regulated in LPS-treated monocytes. This microRNA, when co-transfected in 293T cells together with a construct containing the 3'-UTR of the VPAC1 gene, significantly reduced the luciferase activity in a standard expression assay. The U937 cell line as well as primary monocytes enforced to express miR-525-5p, both down-modulate VPAC1 expression at similar extent. CONCLUSIONS/SIGNIFICANCE: Our results show that the response to an inflammatory stimulus elicits in monocytes a rapid increase of miR-525-5p that targets a signaling pathway involved in the control of the immune homeostasis.
BACKGROUND: The humanVasoactive Intestinal Peptide (VIP) is a neurokine with effects on the immune system where it is involved in promoting tolerance. In this context, one of its receptors, VPAC1, has been found to be down-modulated in cells of the immune network in response to activating stimuli. In particular, the bacterial liposaccharide (LPS), a strong activator of the innate immune system, induces a rapid decrease of VPAC1 expression in monocytes and this event correlates with polymorphisms in the 3'-UTR of the gene. METHODOLOGY/PRINCIPAL FINDINGS: MicroRNA 525-5p, having as putative target the 3'-UTR region of VPAC1, has been analysed for its expression in monocytes and for its role in down-modulating VPAC1 expression. We report here that miR-525-5p is promptly up-regulated in LPS-treated monocytes. This microRNA, when co-transfected in 293T cells together with a construct containing the 3'-UTR of the VPAC1 gene, significantly reduced the luciferase activity in a standard expression assay. The U937 cell line as well as primary monocytes enforced to express miR-525-5p, both down-modulate VPAC1 expression at similar extent. CONCLUSIONS/SIGNIFICANCE: Our results show that the response to an inflammatory stimulus elicits in monocytes a rapid increase of miR-525-5p that targets a signaling pathway involved in the control of the immune homeostasis.
The humanVasoactive Intestinal Peptide (VIP) is expressed and secreted by neurones
innervating primary and secondary immune organs, and is involved in smooth muscle
relaxation, exocrine and endocrine secretion, and water and ion flux in lung and
intestinal epithelia [1]–[4]. VIP has also a strong
anti-inflammatory effects in several models of chronic and immune-mediated
inflammatory diseases [5]–[10]. VIP signals
through three type II, G-coupled receptors, PAC1, VPAC1 and VPAC2, triggering a
cascade of intracellular events that differ depending on cell and receptor types
[11]. VPAC1 is ubiquitous and highly conserved through
species [12]. The down-modulation of the VPAC1 has been
described in response to activating stimuli in cells of the immune system [13].
This has been interpreted as a transient switching off of the regulatory pathway
mediated by VIP that counterbalances the inflammatory signals. Indeed VIP can
modulate the production of some inflammatory cytokines and chemokines and therefore
acts as an important player in orchestrating the inflammatory response [14], [15].
Furthermore, VIP has been shown to induce human tolerogenic DCs that, in turn,
promote regulatory T cells [16], [17]. Therefore, VIP signalling might play a role in
dysregulating the immune system leading to autoimmune diseases. Accordingly, a
deficient expression of one of its receptors, VPAC1, has been reported in patients
with Rheumatoid Arthritis and this appeared to correlate with polymorphisms at the
3′-UTR of the gene [18]. We have also recently described how LPS
treatment can induce a down-modulation of the VPAC1 in monocytes whose kinetics also
correlated with variations at 3′-UTR of the gene [19], suggesting a
contribution by this region to VPAC1 tuning.MicroRNAs are a well-established class of small (22 nucleotides) endogenous noncoding
RNAs that influence the stability and translation of messenger RNAs. The mature
microRNAs are processed from a 70 nucleotide long precursors (pre-miRNA) exported
from the nucleus, processed through the action of the cytoplasmic enzyme Dicer,
after which the mature miRNA is loaded into the RNA-induced silencing complex
(RISC). The RISC complex is guided to the 3′-untranslated complementary
region (3′-UTR) of the target RNAs. The matching is imperfect and the
so-called “seed region” (2–8 nucleotide) is most
important for target recognition and silencing. The recognition of the target
sequence can induce inhibition of the translation and destabilization of the target
RNA [20]–[23]. More and more reports
are involving the activity of microRNAs in the modulation of immune functions as
well as in the dysregulation leading to inflammatory, autoimmune diseases [24]–[29]. Having shown that the
kinetics of VPAC1 down-regulation in LPS-treated monocytes correlates in particular
with SNP rs896 in the 3′-UTR of the VPAC1 gene, we searched for microRNAs
having as putative target a sequence that harbors or is close to SNP rs896.
MiR-525-5p (MI0003152), mapping in chromosome 19 and showing a sequence partially
complementary to a region contiguous to rs896, appeared as the best candidate. We
show here that miR-525-5p is upregulated in peripheral blood monocytes upon LPS
stimulation and that its enforced expression causes a significant reduction of the
VPAC1.
Results
MicroRNA-525-5p is predicted to target a region of VPAC1 3′-UTR and
it is upregulated in LPS-treated monocytes
According to the observation that SNP rs896 mapping at 3′-UTR of VPAC1
gene correlates with a reduced expression of VPAC1 mRNA and protein in
LPS-treated monocytes [19], an on-line search in the miRgen database
(http://www.diana.pcbi.upenn.edu/miRGen.html) for microRNAs
having as putative target site the region encompassing or close to rs896, was
performed. Among the 18 microRNAs putatively targeting the 3′-UTR of
VPAC1, miR-525-5p fulfilled this requirement. This prompted us to investigate
whether miR-525-5p was expressed in monocytes and whether it was modulated by
LPS and/or other stimuli known to activate monocytes. Figure 1 reports the quantitative RT-PCR
specific for miR-525-5p following treatment of monocytes from three different
individuals with Escherichia coli liposaccharide (LPS) from two
different serotypes: 055:B5 (0.05 µg/ml) and 026:B6 (0.05
µg/ml); PMA (5 nM), CoCl2 (20 µg/ml) and bacterial
lipoprotein (LP) (0.05 µg/ml) after 1 h and 9 h treatment.
Interestingly, miR-525-5p was found to be expressed, although at low level, in
the untreated monocytes. However, its expression was rapidly upmodulated by LPS
treatment. Lipoprotein was also inducing a similar miR-525-5p upregulation
(Figure 1, monocytes RU)
whereas CoCl2 and PMA had no or a negligible effect (Figure 1, monocytes RU, NE and
MA). To confirm the effect of LPS on miR525-5p and to further analyze the
individual variability shown in Figure 1 in the magnitude of the response to LPS treatment,
monocytes from eight additional healthy subjects were also treated with LPS
(055:B5 serotype) for 1 h, 9 h, and, when possible, 20 h (Figure 2A). As expected, upon LPS treatment,
miR-525-5p expression was promptly induced. The amount and the kinetics of its
upregulation varied from one subject to the other: in some cases, the expression
increased up to 40 folds (C,H), in some others only few folds (A,F,G); in most
of them the highest level was reached already after one hour from LPS addition
(C,D,F,G,H), in others the kinetics was slower (B,E). However, in all of them,
LPS treatment induced a clear-cut increase in the miR-525-5p intracellular
level. In the four cases in which the analysis could be performed at 20 hours
time-point, miR-525-5p was reduced towards the background level, indicating a
short time range in which its functional effects can be produced. In parallel,
the amount of the VPAC1 mRNA was analysed and found to be deeply down-modulated
by LPS in all subjects but E and F, in which cases the reduction was less
pronounced (Figure 2B).
Figure 1
Effect of different stimuli on miR-525-5p expression in human
monocytes.
Monocytes from three different donors were used to analyze the effect of
LPS, lipoprotein, PMA and CoCl2 on miR-525-5p expression. (A)
Monocytes RU were stimulated with 0.05 µg/ml of LPS from
E coli 055:B5; 0.05 µg/ml lipoprotein
(LP: Pam2CSK4); 5 nM PMA or 0.05 µg/ml of LPS from E
coli 026:B6 for 1 h or 9 h. Relative gene expression in
stimulated cells were compared with untreated cells (UNT), which are set
to 1. (B, C) Monocyte NE and MA were stimulated with 0.05
µg/ml LPS (from Escherichia coli 055:B), 5 nM
PMA and 20 µg/ml CoCl2 for 1 h and 9 h. UNT was set
to 1.
Figure 2
Increased expression of miR-525-5p in LPS-treated monocytes.
(A): Relative RT-PCR of miR-525 performed in monocytes purified from 8
subjects (A–H) and unstimulated (0 h) or stimulated with LPS
from E coli 055:B (0.05 µg/ml) for 1 h, 9 h and 20 h (only for
subjects C, D, G and H). Results were normalized to 18S expression
levels. (B): corresponding levels of VPAC1 mRNA for each subject are
reported. Results were normalized to GAPDH expression levels. AU:
arbitrary units.
Effect of different stimuli on miR-525-5p expression in human
monocytes.
Monocytes from three different donors were used to analyze the effect of
LPS, lipoprotein, PMA and CoCl2 on miR-525-5p expression. (A)
Monocytes RU were stimulated with 0.05 µg/ml of LPS from
E coli 055:B5; 0.05 µg/ml lipoprotein
(LP: Pam2CSK4); 5 nM PMA or 0.05 µg/ml of LPS from E
coli 026:B6 for 1 h or 9 h. Relative gene expression in
stimulated cells were compared with untreated cells (UNT), which are set
to 1. (B, C) Monocyte NE and MA were stimulated with 0.05
µg/ml LPS (from Escherichia coli 055:B), 5 nM
PMA and 20 µg/ml CoCl2 for 1 h and 9 h. UNT was set
to 1.
Increased expression of miR-525-5p in LPS-treated monocytes.
(A): Relative RT-PCR of miR-525 performed in monocytes purified from 8
subjects (A–H) and unstimulated (0 h) or stimulated with LPS
from E coli 055:B (0.05 µg/ml) for 1 h, 9 h and 20 h (only for
subjects C, D, G and H). Results were normalized to 18S expression
levels. (B): corresponding levels of VPAC1 mRNA for each subject are
reported. Results were normalized to GAPDH expression levels. AU:
arbitrary units.It is known that treatment of monocytes with LPS induces a strong inflammatory
response involving the NF-kB and the MEK-ERK1/2 pathways and leading to the
production of pro-inflammatory cytokines such as TNF-alpha [30]–[31]. To investigate
whether these two pathways were also controlling the miR-525-5p upregulation,
two inhibitors, TPCK and SP600125, targeting respectively NF-kB [32]
and JNK [33], were used in combination with LPS and the
expression of miR-525-5p as well as TNF alpha was evaluated in monocytes from
two different donors (Figure
3). The data show that, in both cases, TPCK as well as SP600125
inhibitors equally impair the expression of miR-525-5p and TNF-alpha.
Figure 3
Effect of LPS inhibitors on miR-525 expression in monocytes.
Monocytes NE and ME were treated with 0.05 µg/ml of LPS from E.
coli 055:B and with 50 µM of SP600125 or 25 µM of
TPCK. Total RNA was purified from the respective cell pellets and
analyzed by qRT-PCR for the expression of miR-525-5p (A) or TNF-alpha
(B). Untreated cells were set to 1. Nd: not done.
Effect of LPS inhibitors on miR-525 expression in monocytes.
Monocytes NE and ME were treated with 0.05 µg/ml of LPS from E.
coli 055:B and with 50 µM of SP600125 or 25 µM of
TPCK. Total RNA was purified from the respective cell pellets and
analyzed by qRT-PCR for the expression of miR-525-5p (A) or TNF-alpha
(B). Untreated cells were set to 1. Nd: not done.
VPAC1 3′-UTR is a target for miR-525-5p
The induction of miR-525-5p expression in LPS-treated monocytes, prompted us to
verify whether the VPAC1 3′-UTR could be indeed a target for
miR-525-5p. A reporter construct was then generated in the vector pGL3 that
contains the SV40 promoter driving the expression of a mRNA encoding the firefly
luciferase (Figure 4). Two
constructs of 3-'UTR of VPAC1 (carrying the haplotypes containing C or
T at SNP rs896, named respectively VPAC1-C and VPAC1-T) were cloned downstream
the luciferase gene and transfected into 293T cells together with mimic
hsa-miR-525-5p or negative-control mimic and pRL-TK to normalize transfection.
As further control, a reporter construct with a three nucleotide mutation in the
predicted seed region in the VPAC1 3′-UTR was also generated (Figure 4). Twenty-four hours
after transfection, the cells were harvested and assayed for luciferase
expression. For both VPAC1 constructs, a comparable repression of luciferase
activity ranging around 35%, was observed in cells transfected with
miR-525-5p compared to those transfected with the negative control (scrambled)
(Figure 5, histograms 1
vs 2 and 3 vs 4; p = 0.007). The mutation
clearly abolished the effect of miR-525-5p in down-modulating the luciferase
activity (Figure 5,
histograms 5–8). The small difference between the mutated constructs
VPAC1-C and VPAC1-T was not significant. Taken together, these results indicated
that miR-525-5p can interfere with luciferase mRNA translation via direct
interaction with the VPAC1 3′-UTR.
Figure 4
The predicted miR-525-5p target site located in the VPAC1
3′-UTR.
Schematic representation of the expression vector pGL3-Promoter
containing the VPAC1 3′-UTR. In detail, the target site of
miR-525-5p; the arrow indicates SNP rs896 (C/T). The rectangle
highlights the mutated bases in the seed region.
Figure 5
MiR-525-5p inhibits the reporter gene activity.
293T cells were transfected with VPAC1-C and VPAC1-T constructs,
harbouring the two alternative 3′-UTR haplotypes or the
respective mutated construct and 40 µM of mimic 525-5p RNA or
40 µM of the mimic negative control (SC). Twenty-four hours
post transfection, cell were assayed for Firefly luciferase activity and
normalized to Renilla luciferase activity, relative luciferase activity
(AU). Co-transfection of miR525-5p and the two constructs (histograms
1,2 and 3,4) induced the same degree of inhibition of the reporter
activity (35%) (*
p = 0.007) whereas the mutated
constructs showed no significant effect (histograms 5–8).
Scrambled-control (SC) level of luciferase activity was set to 1.
Results reported here are the mean±SD of four independent
experiments.
The predicted miR-525-5p target site located in the VPAC1
3′-UTR.
Schematic representation of the expression vector pGL3-Promoter
containing the VPAC1 3′-UTR. In detail, the target site of
miR-525-5p; the arrow indicates SNP rs896 (C/T). The rectangle
highlights the mutated bases in the seed region.
MiR-525-5p inhibits the reporter gene activity.
293T cells were transfected with VPAC1-C and VPAC1-T constructs,
harbouring the two alternative 3′-UTR haplotypes or the
respective mutated construct and 40 µM of mimic 525-5p RNA or
40 µM of the mimic negative control (SC). Twenty-four hours
post transfection, cell were assayed for Firefly luciferase activity and
normalized to Renilla luciferase activity, relative luciferase activity
(AU). Co-transfection of miR525-5p and the two constructs (histograms
1,2 and 3,4) induced the same degree of inhibition of the reporter
activity (35%) (*
p = 0.007) whereas the mutated
constructs showed no significant effect (histograms 5–8).
Scrambled-control (SC) level of luciferase activity was set to 1.
Results reported here are the mean±SD of four independent
experiments.
MiR-525-5p affects the expression of VPAC1 protein in U937 cell line as well
as in human monocytes
Each miR can have hundreds of targets and the balance between the amount of that
specific miR and the relative abundance of the target mRNAs influences the
functional outcome. To verify whether VPAC1 protein expression was indeed
regulated by miR-525-5p in a more physiological setting, U937 cell line, in
which miR525-5p was not expressed but into which hsa-miR-525-5p was efficiently
transfected, were harvested at different times and analysed for VPAC1. Figure 6 shows the results of
the western blot analysis. After 24 h, no difference in the level of expression
of VPAC1 protein was detectable. However, after 48 h, VPAC1 protein was clearly
reduced and after 72 h was still lower than the control. Accordingly, 48 h time
point was chosen to statistically evaluate the effect of miR-525-5p enforced
expression on VPAC1 in U937 cell line as well as primary monocytes. The
experiment was repeated further five times using the U937 cell line (Figure 7A), and a reduction of
34% of VPAC1 protein level was again observed (p<0.02). VPAC1
mRNA level was also affected showing a reduction of about 40%
(p<0.02) (Figure 7B).
These results, prompted us to investigate the effect of the enforced expression
of miR-525-5p in primary monocytes. CD14-positive cells isolated from 7 healthy
donors were transiently transfected with miR-525-5p or negative control miR and
harvested after 48 h. Although the level of VPAC1 expression in each subject was
extremely variable, probably depending on the genetic background or on the level
of activation/differentiation of the monocytes, the enforced expression of
miR-525-5p led to a consistent reduction of VPAC1 protein compared to the miR
control (p<0.02) (Figure
8). This was not paralleled, as in the continuous cell line, by a
comparable down-modulation of VPAC1 mRNA, which was variable and not
significantly different between monocytes treated with the miR-control or the
miR-525-5p (not shown).
Figure 6
U937 cells line transfected with miR-525-5p decrease VPAC1 protein at
48 h.
(A) Western blot analysis of VPAC1 in U937 cells transfected for 24 h, 48
h and 72 h, with 40 µM of miR-525-5p or negative-miR (SC).
GAPDH immunoblot was used as loading control. One of three independent
experiments is shown. (B) Densitometric analysis: bars represent the
mean±SD of three independent experiments. AU: arbitrary
units.
Figure 7
The VPAC1 protein level is decreased in U937 cells after 48 h from
miR-525-5p transfection.
(A) VPAC1 protein level was evaluated by densitometric analysis of five
independent western blots. Bar represents the mean±SD.
Scrambled miR was arbitrarily set to 1. VPAC1 protein level was
34% lower in the miR-525-5p transfected cells vs control
(* p<0.02). (B) qRT-PCR analysis of VPAC1 mRNA in the
same samples as above (*p<0.02). Scrambled-control (SC)
level was set to 1. The error bar represents the mean ±
SD.
Figure 8
MiR-525-5p induces down-modulation of VPAC1 protein in ex
vivo transfected monocytes.
(A) Western blot analysis of VPAC1 protein in monocytes transfected with
miR525-5p and kept in culture for 48 h (representative of seven donors
analysed). (B) Densitometric analysis of western blot. Histograms
represent VPAC1 protein level as mean±SD in monocytes from 7
healthy donors. The decrease was 31%
(*p<0.02). Scrambled-control (SC) was set to 1. AU:
arbitrary units.
U937 cells line transfected with miR-525-5p decrease VPAC1 protein at
48 h.
(A) Western blot analysis of VPAC1 in U937 cells transfected for 24 h, 48
h and 72 h, with 40 µM of miR-525-5p or negative-miR (SC).
GAPDH immunoblot was used as loading control. One of three independent
experiments is shown. (B) Densitometric analysis: bars represent the
mean±SD of three independent experiments. AU: arbitrary
units.
The VPAC1 protein level is decreased in U937 cells after 48 h from
miR-525-5p transfection.
(A) VPAC1 protein level was evaluated by densitometric analysis of five
independent western blots. Bar represents the mean±SD.
Scrambled miR was arbitrarily set to 1. VPAC1 protein level was
34% lower in the miR-525-5p transfected cells vs control
(* p<0.02). (B) qRT-PCR analysis of VPAC1 mRNA in the
same samples as above (*p<0.02). Scrambled-control (SC)
level was set to 1. The error bar represents the mean ±
SD.
MiR-525-5p induces down-modulation of VPAC1 protein in ex
vivo transfected monocytes.
(A) Western blot analysis of VPAC1 protein in monocytes transfected with
miR525-5p and kept in culture for 48 h (representative of seven donors
analysed). (B) Densitometric analysis of western blot. Histograms
represent VPAC1 protein level as mean±SD in monocytes from 7
healthy donors. The decrease was 31%
(*p<0.02). Scrambled-control (SC) was set to 1. AU:
arbitrary units.
Discussion
Recent research has involved miRNAs in the regulation of innate and adaptative immune
responses as well as in the inflammatory networks in various cell and tissue types
[29],
[34]–[37]. VIP is known to play a
relevant role in controlling the immune response through the signalling of its
receptors. In particular, VPAC1 gene has been shown to be down-modulated in cells of
the immune system after activation [13], [19]. We
investigated here whether microRNAs play a role in the LPS-mediated VPAC1
down-modulation in peripheral blood monocytes. Any given microRNA may regulate
hundreds of different targets at different spatial-temporal settings [38], [39] and each
one needs to be experimentally validated. We focused our studies on miR-525-5p
because its target sequence in the VPAC1 mRNA was next to SNP rs896, that was found
to correlate with the kinetics of VPAC1 mRNA down-modulation and maps within a
stretch of AT (TTTTT/CAAA) where the T/C substitution could modify the secondary
structure of the mRNA. Therefore, it was interesting to assess whether SNP rs896,
mapping just upstream miR-525-5p target sequence, could influence the binding of
this microRNA. In the experimental settings used in this study, we were not able to
highlight any significant difference in targeting the two sequences by miR-525-5p.
However, there are surprisingly few studies reporting a differential effect of
miRNAs targeting polymorphic positions in the 3′-UTR of genes, that
usually harbour a considerable number of SNPs [40], [41].
This might be due to technical limitations that do not allow a confident fine tuning
of the system in which the ratio microRNA-target is crucial and difficult to
quantify in its final combination. Therefore, although we could not see any
significant difference in targeting the two sequences by miR-525-5p, this does not
exclude that it might be relevant in physiological conditions, especially in those
cases in which the induction of miR-525-5p by LPS is less pronounced and/or the
competion with other targets is higher. In this context, it is noteworthy that some
subjects responded very effectively to LPS increasing miR-525-5p level manyfold
whereas some others showed a less dramatic upregulation. Such variation might be due
to the genetic background and needs to be further explored since it might influence
the individual response to LPS and therefore the subsequent inflammatory cascade.
However, a clear cut increase of miR-525-5p was evident in all donors analysed here.
The upregulation at the low LPS dose used here was temporary since 20 hours after
treatment, the level of miR-525-5p was back or very close to the basal level,
suggesting that there is a narrow window during which miR-525-5p may act on its
targets. This is in agreement with the hypothesis that one of the tasks of
miR-525-5p could be, acting on different targets, to neutralize the negative signals
in the presence of an inflammatory input. Consequently, its effect must be timely
regulated so that, once the harm stops, the regulatory network can be restored. The
relevance and the specificity of the miR-525-5p upregulation in the context of the
inflammatory response to bacterial stimulation, is well supported by the observation
that only the bacterial products LPS and, at less extent, LP, were able to induce a
consistent increase of such miR while other compounds known to activate monocytes
such as PMA or CoCl2 do not (Figure 1). Both the bacterial compounds are ligands for TLR molecules,
LP for TLR2-TLR6 and LPS for TLR4 and their effect is mediated by NF-kB and MAP
kinases pathways [42]. Accordingly, specific inhibitors of these two
ways clearly inhibited miR-525-5p as well as TNF-alpha upregulation. These data
strongly suggest that the upregulation of miR-525-5p is part of a concerted action
that orchestrates the monocyte response to the bacterial invasion. The response is
effective since the low concentration of LPS (0.05 µg/ml) used to
stimulate monocytes induce a strong upregulation of miR-525-5p, suggesting a
physiological role for this event. We have shown here that VPAC1, a receptor for a
neurokine known to counteract the inflammatory response, is one of the targets for
miR-525-5p since its expression is reduced, upon miR-525-5p transfection, both in
the U937 cell line and in the peripheral blood monocytes. The co-occurrence of the
miR-525-5p induction and of VPAC1 down-modulation already evident few hours after
LPS addition [19], together with the data reported here showing
that VPAC1 is a target for this microRNA, strongly suggests that the two events
co-operate in orchestrating the response of immune cells to a danger signal. It is
likely that the effect of LPS on VPAC1 down-modulation is the result of different
events, either transcriptional or post-transcriptional, however this is the first
report showing how the enforced expression of a microRNA determines its down-tuning.
Although there are still several aspects that need to be explored, i.e. why
individuals respond so differently to LPS in terms of miR-525-5p induction or
whether there are other regulatory mechanisms working in concert with miR-525-5p to
tune down VPAC1 and, eventually, how they interact each other, nevertheless the data
reported here allow to identify a partnership that is likely to play a role in
modulating the native immune response and, therefore, be a potential therapeutic
target.
Materials and Methods
Bioinformatic prediction of miR target site on VPAC1 gene
The miRgen database (http://www.diana.pcbi.upenn.edu/miRGen/v3/miRGen.html) which
integrates analysis from TargetScan, Pictar, and Miranda generated a list of 18
predicted miRNAs targeting the 3′-UTR of VPAC1. Among them, miR-525-5p
(GenBank accession no. MI0003152) was chosen fort he position of its putative
target sequence near the SNP rs896.
RNA isolation and miR quantification by RT-PCR Analysis
Total RNA was isolated from monocytes and U937 cell line using the Trizol reagent
(Invitrogen, Carlsbad, CA, USA) according to the manufacturer's
instructions. RNA quality was monitored by running the aliquots of each sample
in 1% agarose gel and by spectrophotometric analysis. Subsequently,
10 ng of total RNA was used to perform reverse transcription using the
TaqMan® microRNA assay kit (HSAMIR525 001174, Applied Biosystems, Foster
City, CA, USA) and High-Capacity cDNA Reverse Trascription kit (Applied
Biosystems) according to the manufacturer's instructions. VPAC1
transcripts were also evaluated using real-time PCR (HS00270351_m1, Applied
Biosystems). One microgram of total RNA from each sample was reverse transcribed
using random primers of the High Capacity Reverse Transcription kit. Real-time
PCR was performed in ABI PRISM 7300 Sequence Detection Systems (Applied
Biosystems) using TaqMan®2X Universal Master Mix (catalog no 4324018,
Applied Biosystems), in a total volume of 20 µl of reaction mixture.
Each sample was assayed in triplicates. The thermal cycling conditions were set
up sequentially as follows: denaturating at 95°C for 10 minutes and 60
cycles of 95°C for 15 seconds and 60°C for 1 minute. The fold
change of the microRNA and VPAC1 gene in the samples was calculated using the
2−ΔΔCT method. All values were
normalized to endogenous control 18S (HS 99999901-S1, Applied Biosystems) for
miRNA and GAPDH (HS 99999905, Applied Biosystems) for VPAC1 and were expressed
in arbitrary units.TNF-α mRNA (HS00174128_m1, Applied Biosystems) expression was used to
evaluated the effect of the pharmacologic inhibitors on monocytes.
Plasmids
The pGL3 Promoter Vector, a plasmid that express the Firefly luciferase gene
under the control of SV40 promoter and therefore is constitutively expressed,
was purchased from Promega (Madison, WI, USA). The pRL-TK, a plasmid that
express Renilla Luciferase gene under the control of the HSV-TK promoter, was
used as endogenous transfection control.The humanVPAC1 3′-UTR (1307–2790 bp of Genebank accession
number NM_004624) was amplified from human cDNA using PCR and the primers:
(forward) 5′-gcgcgc
and (reverse) 5′-gcgcgc
. This 1014 bp fragment was cloned into the
XbaI site (underlined in the primers) of pGL3 Promoter Vector downstream the
luciferase gene. The mutated construct was generated by using PCR-based
mutagenesis of the 1014 bp VPAC1 3′UTR and the primers: 5′-agtgggttattcgtcagtttttgtttggag-3′
and 5′ctccaaacaaaaactgacgaataacccact-3′.
This generated a VPAC1-3′UTR with a 3 bp mutation in the predicted
miR-525-5p seed region. The resulting fragment was cloned into the XbaI site of
pGL3 as above. All constructs were checked by DNA sequencing.
Cell cultures and stimulation conditions
Monocytes were purified from peripheral blood of anonymous donors from the local
data banks using the Monocyte isolation kit (Miltenyi, Bergisch, Gladbach,
Germany) according to the manufacturer's instructions. Cells were
seeded at concentration of 106 cells/ml in RPMI 1640 supplemented
with 10% FCS, 2 mM L-glutamine, 25 U/ml penicillin and 25 U/ml
streptomycin (all purchased from Gibco, Invitrogen, Carlsbad, CA, USA) in cell
culture plates and treated for 1 h or 9 h with LPS from two different sources:
from E coli 055:B5 (0.05 µg/ml; Sigma-Aldrich, St
Louis, MO, USA) or from E. coli 026:B6 (0.05 µg/ml;
Sigma-Aldrich) or treated with PMA (5 nM; Sigma-Aldrich) or cobalt chloride
(CoCl2, 20 µg/ml; Sigma -Aldrich) or synthetic
bacterial lipoprotein (0,05 µg/ml; Pam2CSK4; InvivoGen, San Diego,
CA-USA). For treatment with pharmacologic inhibitors, human primary monocytes
were incubated for 1 h with SP600125 (50 µM; Calbiochem, Merck KGaA,
Darmstadt, Germany) or TPCK (25 µM; Sigma-Aldrich) in the presence or
absence of LPS (0.05 µg/ml; from E. coli 055:B5,
Sigma-Aldrich). 293T cell line (ATCC cat. CRL-11268) was cultured in DMEM
medium, supplemented with 10% FCS. U937 monocytic leukemic cell line
(ATCC cat. CRL-1593.2) was cultured in RPMI 1640, supplemented with
10% FCS. Cells were maintained in a humidified atmosphere of
7% CO2 at 37°C.
Transfections
The following double-stranded RNAs that mimic mature miRNA, has-miR-525-5p and
miRNAs Negative Control were obtained from Dharmacon, (Lafayette, USA). The
transfection of 293T cells was optimized utilizing JET PEI Polyplus Transfection
Reagent (Polyplus-Transfection, New York, NY, USA). 293T cells were seeded in 24
wells plate and transfected with the luciferase reporter constructs described
above (300 ng), pRL-TK control plasmid (5 ng) and the appropriate mimic miRNAs.
After 24 h, cells were lysed with Passive Lysis Buffer (Promega) and the
luciferase activity was determined. U937 cells line and primary monocytes were
transfected with the mimic has-miR-525-5p or the Negative Control using
Lipofectamine 2000 Reagent (Invitrogen) according to the manufacturer's
instructions. After the indicated time from transfection, RNAs and proteins were
extracted for the determination of miR-525 and VPAC1 expression.
Luciferase assay
Luciferase activity was measured using the Dual-Luciferase Assay kit according to
manufacturer's instructions (Promega) with a beta-counter luminometer.
Relative luciferase activity was calculated as ratio of the raw Firefly
luciferase activity and the Renilla luciferase activity. All assays were
performed in triplicate in four independent experiments.
Protein extraction and Western blot assay
Protein extracts were prepared from monocytes and U937 cell line using RIPA
buffer (Sigma-Aldrich), and analysed by SDS-PAGE 12% polyacrilamide
gel, blotted on nitrocellulose membrane (GE Healthcare, Piscataway, Nj, USA),
and probed o.n. with rabbit polyclonal antibody anti-VPAC1 (kindly provided by
Dr. K. Freason). The GAPDH signal was used as loading control (Santa Cruz
Biotecnology, Santa Cruz, CA).
Statistical analysis
All data were expressed as mean±SD, the pair comparison was made, and
statistical significance was determined using t-test. Statistical significance
was defined as p<0.05.
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