Literature DB >> 20702663

Multiplex amplified nominal tandem-repeat analysis (MANTRA), a rapid method for genotyping Mycobacterium tuberculosis by use of multiplex PCR and a microfluidic laboratory chip.

Adam J Merritt1, Terillee Keehner, Lyn C O'Reilly, Russell L McInnes, Timothy J J Inglis.   

Abstract

A variable-number tandem-repeat genotyping method for Mycobacterium tuberculosis was converted to run in a multiplex PCR format on a 12-well microfluidic laboratory chip. Epidemiologically and genotypically distinct isolate clusters of M. tuberculosis were identified. This rapid genotyping method has potential application in smaller clinical laboratories and public health field investigations.

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Year:  2010        PMID： 20702663      PMCID： PMC2953129          DOI： 10.1128/JCM.00471-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  9 in total

1.  Variable-number tandem repeat typing of Mycobacterium tuberculosis isolates with low copy numbers of IS6110 by using mycobacterial interspersed repetitive units.

Authors:  Lauren Steinlein Cowan; Laura Mosher; Lois Diem; Jeffrey P Massey; Jack T Crawford
Journal:  J Clin Microbiol       Date:  2002-05       Impact factor: 5.948

2.  Deployable laboratory response to emergence of melioidosis in central Sri Lanka.

Authors:  Timothy J J Inglis; Adam Merritt; Joanne Montgomery; Indika Jayasinghe; Vasanthi Thevanesam; Russell McInnes
Journal:  J Clin Microbiol       Date:  2008-08-20       Impact factor: 5.948

3.  Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates.

Authors:  Caroline Allix-Béguec; Dag Harmsen; Thomas Weniger; Philip Supply; Stefan Niemann
Journal:  J Clin Microbiol       Date:  2008-06-11       Impact factor: 5.948

4.  Use of an automated multiple-locus, variable-number tandem repeat-based method for rapid and high-throughput genotyping of Staphylococcus aureus isolates.

Authors:  Patrice Francois; Antoine Huyghe; Yvan Charbonnier; Manuela Bento; Sébastien Herzig; Ivan Topolski; Bénédicte Fleury; Daniel Lew; Pierre Vaudaux; Stephan Harbarth; Willem van Leeuwen; Alex van Belkum; Dominique S Blanc; Didier Pittet; Jacques Schrenzel
Journal:  J Clin Microbiol       Date:  2005-07       Impact factor: 5.948

5.  Identifying Mycobacterium species and strain typing using a microfluidic labchip instrument.

Authors:  Robert C Cooksey; Josef Limor; Glenn P Morlock; Jack T Crawford
Journal:  Biotechniques       Date:  2003-10       Impact factor: 1.993

6.  Rapid and high-throughput genotyping of Staphylococcus epidermidis isolates by automated multilocus variable-number of tandem repeats: a tool for real-time epidemiology.

Authors:  Patrice Francois; Alena Hochmann; Antoine Huyghe; Eve-Julie Bonetti; Gesuele Renzi; Stephan Harbarth; Claus Klingenberg; Didier Pittet; Jacques Schrenzel
Journal:  J Microbiol Methods       Date:  2008-01-30       Impact factor: 2.363

7.  Evaluation of multiple genetic markers for typing drug-resistant Mycobacterium tuberculosis strains from Poland.

Authors:  Anna Sajduda; Jarosław Dziadek; Roman Kotłowski; Françoise Portaels
Journal:  Diagn Microbiol Infect Dis       Date:  2006-02-20       Impact factor: 2.803

8.  Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats.

Authors:  R Frothingham; W A Meeker-O'Connell
Journal:  Microbiology       Date:  1998-05       Impact factor: 2.777

9.  Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

Authors:  Iñaki Comas; Susanne Homolka; Stefan Niemann; Sebastien Gagneux
Journal:  PLoS One       Date:  2009-11-12       Impact factor: 3.240
  9 in total
  2 in total

Review 1.  The lab without walls: a deployable approach to tropical infectious diseases.

Authors:  Timothy J J Inglis
Journal:  Am J Trop Med Hyg       Date:  2013-04       Impact factor: 2.345

2.  The potential of TaqMan Array Cards for detection of multiple biological agents by real-time PCR.

Authors:  Phillip A Rachwal; Helen L Rose; Victoria Cox; Roman A Lukaszewski; Amber L Murch; Simon A Weller
Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240
  2 in total

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