Literature DB >> 20702453

Genomics in the ecological arena.

Luisa Orsini1, Ellen Decaestecker, Luc De Meester, Michael E Pfrender, John K Colbourne.   

Abstract

This meeting report presents the cutting-edge research that is developing around the waterflea Daphnia, an emerging model system in environmental genomics. Daphnia has been a model species in ecology, toxicology and evolution for many years and is supported by a large community of ecologists, evolutionary biologists and ecotoxicologists. Thanks to new advances in genomics and transciptomics and to the sustained efforts of the Daphnia Genomics Consortium (DGC), Daphnia is also rapidly developing as a model system in environmental genomics. Advances in this emerging field were presented at the DGC 2010, held for the first time in a European University. During the meeting, a plethora of elegant studies were presented on the mechanisms of responses to environmental challenges using recently developed genomic tools. The DGC 2010 is a concrete example of the new trends in ecology and evolution. The times are mature for the application of innovative genomic and transcriptomic tools for studies of environmental genomics in non-model organisms.

Mesh:

Year:  2010        PMID: 20702453      PMCID: PMC3030899          DOI: 10.1098/rsbl.2010.0629

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  3 in total

1.  Host-parasite 'Red Queen' dynamics archived in pond sediment.

Authors:  Ellen Decaestecker; Sabrina Gaba; Joost A M Raeymaekers; Robby Stoks; Liesbeth Van Kerckhoven; Dieter Ebert; Luc De Meester
Journal:  Nature       Date:  2007-11-14       Impact factor: 49.962

2.  Population dynamics determine genetic adaptation to temperature in Daphnia.

Authors:  Wendy Van Doorslaer; Robby Stoks; Cathy Duvivier; Anna Bednarska; Luc De Meester
Journal:  Evolution       Date:  2009-03-10       Impact factor: 3.694

3.  Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna.

Authors:  Lars-Henrik Heckmann; Richard M Sibly; Richard Connon; Helen L Hooper; Thomas H Hutchinson; Steve J Maund; Christopher J Hill; Anthony Bouetard; Amanda Callaghan
Journal:  Genome Biol       Date:  2008-02-21       Impact factor: 13.583

  3 in total
  7 in total

1.  Heterodimeric TALENs induce targeted heritable mutations in the crustacean Daphnia magna.

Authors:  Akiko Naitou; Yasuhiko Kato; Takashi Nakanishi; Tomoaki Matsuura; Hajime Watanabe
Journal:  Biol Open       Date:  2015-02-13       Impact factor: 2.422

2.  TALEN-mediated knock-in via non-homologous end joining in the crustacean Daphnia magna.

Authors:  Takashi Nakanishi; Yasuhiko Kato; Tomoaki Matsuura; Hajime Watanabe
Journal:  Sci Rep       Date:  2016-11-07       Impact factor: 4.379

3.  CRISPR/Cas-mediated knock-in via non-homologous end-joining in the crustacean Daphnia magna.

Authors:  Hitoshi Kumagai; Takashi Nakanishi; Tomoaki Matsuura; Yasuhiko Kato; Hajime Watanabe
Journal:  PLoS One       Date:  2017-10-18       Impact factor: 3.240

4.  Genomic integration and ligand-dependent activation of the human estrogen receptor α in the crustacean Daphnia magna.

Authors:  Kerstin Törner; Tsuyoshi Nakanishi; Tomoaki Matsuura; Yasuhiko Kato; Hajime Watanabe
Journal:  PLoS One       Date:  2018-06-08       Impact factor: 3.240

5.  Co-option of the bZIP transcription factor Vrille as the activator of Doublesex1 in environmental sex determination of the crustacean Daphnia magna.

Authors:  Nur Syafiqah Mohamad Ishak; Quang Dang Nong; Tomoaki Matsuura; Yasuhiko Kato; Hajime Watanabe
Journal:  PLoS Genet       Date:  2017-11-02       Impact factor: 5.917

6.  Candidate innate immune system gene expression in the ecological model Daphnia.

Authors:  Ellen Decaestecker; Pierrick Labbé; Kirsten Ellegaard; Judith E Allen; Tom J Little
Journal:  Dev Comp Immunol       Date:  2011-04-29       Impact factor: 3.636

7.  TALEN-mediated homologous recombination in Daphnia magna.

Authors:  Takashi Nakanishi; Yasuhiko Kato; Tomoaki Matsuura; Hajime Watanabe
Journal:  Sci Rep       Date:  2015-12-17       Impact factor: 4.379

  7 in total

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