Literature DB >> 20700479

Managing Chaos: Lessons Learned Developing Software in the Life Sciences.

Sarah Killcoyne1, John Boyle.   

Abstract

Entities:  

Year:  2009        PMID： 20700479      PMCID： PMC2917833          DOI： 10.1109/MCSE.2009.198

Source DB:  PubMed          Journal:  Comput Sci Eng        ISSN： 1521-9615            Impact factor:   2.080


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  7 in total

1.  The ENCODE (ENCyclopedia Of DNA Elements) Project.

Authors: 
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

2.  Gene-Expression Omnibus integration and clustering tools in SeqExpress.

Authors:  John Boyle
Journal:  Bioinformatics       Date:  2005-03-03       Impact factor: 6.937

3.  Global analysis of cellular protein translation by pulsed SILAC.

Authors:  Björn Schwanhäusser; Manfred Gossen; Gunnar Dittmar; Matthias Selbach
Journal:  Proteomics       Date:  2009-01       Impact factor: 3.984

4.  Genome-wide mapping of in vivo protein-DNA interactions.

Authors:  David S Johnson; Ali Mortazavi; Richard M Myers; Barbara Wold
Journal:  Science       Date:  2007-05-31       Impact factor: 47.728

5.  Adaptable data management for systems biology investigations.

Authors:  John Boyle; Hector Rovira; Chris Cavnor; David Burdick; Sarah Killcoyne; Ilya Shmulevich
Journal:  BMC Bioinformatics       Date:  2009-03-06       Impact factor: 3.169

6.  A survey of visualization tools for biological network analysis.

Authors:  Georgios A Pavlopoulos; Anna-Lynn Wegener; Reinhard Schneider
Journal:  BioData Min       Date:  2008-11-28       Impact factor: 2.522

7.  Systems biology driven software design for the research enterprise.

Authors:  John Boyle; Christopher Cavnor; Sarah Killcoyne; Ilya Shmulevich
Journal:  BMC Bioinformatics       Date:  2008-06-25       Impact factor: 3.169
  7 in total
  4 in total

1.  Interfaces to PeptideAtlas: a case study of standard data access systems.

Authors:  Sarah Killcoyne; Jeremy Handcock; Thomas Robinson; Eric W Deutsch; John Boyle
Journal:  Brief Bioinform       Date:  2011-11-22       Impact factor: 11.622

2.  LabKey Server: an open source platform for scientific data integration, analysis and collaboration.

Authors:  Elizabeth K Nelson; Britt Piehler; Josh Eckels; Adam Rauch; Matthew Bellew; Peter Hussey; Sarah Ramsay; Cory Nathe; Karl Lum; Kevin Krouse; David Stearns; Brian Connolly; Tom Skillman; Mark Igra
Journal:  BMC Bioinformatics       Date:  2011-03-09       Impact factor: 3.307

3.  Methods for visual mining of genomic and proteomic data atlases.

Authors:  John Boyle; Richard Kreisberg; Ryan Bressler; Sarah Killcoyne
Journal:  BMC Bioinformatics       Date:  2012-04-23       Impact factor: 3.169

4.  Best practices for scientific computing.

Authors:  Greg Wilson; D A Aruliah; C Titus Brown; Neil P Chue Hong; Matt Davis; Richard T Guy; Steven H D Haddock; Kathryn D Huff; Ian M Mitchell; Mark D Plumbley; Ben Waugh; Ethan P White; Paul Wilson
Journal:  PLoS Biol       Date:  2014-01-07       Impact factor: 8.029
  4 in total

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