Literature DB >> 20694679

Measuring the absolute abundance of the Smad transcription factors using quantitative immunoblotting.

David C Clarke1, Xuedong Liu.   

Abstract

In the age of systems biology, biologists seek to quantify the absolute number of molecules in experimentally treated samples. Immunoblotting remains a technique of choice for assessing the relative differences between the protein levels in different samples. Here we discuss how to exploit immunoblotting for estimating the number of Smad transcription factor molecules per cell. We focus on describing the calculations needed to analyze the data. Our methods are generally applicable to the quantification of other cellular proteins.

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Year:  2010        PMID: 20694679      PMCID: PMC4168016          DOI: 10.1007/978-1-60761-738-9_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

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Review 2.  Semisynthesis of proteins by expressed protein ligation.

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3.  Control of cell cycle-dependent degradation of c-Ski proto-oncoprotein by Cdc34.

Authors:  Mara Macdonald; Yong Wan; Wei Wang; Elisabeth Roberts; Tom Hiu Cheung; Richard Erickson; Matthew T Knuesel; Xuedong Liu
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Review 4.  Smad transcription factors.

Authors:  Joan Massagué; Joan Seoane; David Wotton
Journal:  Genes Dev       Date:  2005-12-01       Impact factor: 11.361

Review 5.  Protein ligation: an enabling technology for the biophysical analysis of proteins.

Authors:  Vasant Muralidharan; Tom W Muir
Journal:  Nat Methods       Date:  2006-06       Impact factor: 28.547

Review 6.  Use of vanadate as protein-phosphotyrosine phosphatase inhibitor.

Authors:  J A Gordon
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

7.  Calculation of protein extinction coefficients from amino acid sequence data.

Authors:  S C Gill; P H von Hippel
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8.  Transforming growth factor beta depletion is the primary determinant of Smad signaling kinetics.

Authors:  David C Clarke; Meredith L Brown; Richard A Erickson; Yigong Shi; Xuedong Liu
Journal:  Mol Cell Biol       Date:  2009-02-17       Impact factor: 4.272

9.  Synergistic cooperation of TFE3 and smad proteins in TGF-beta-induced transcription of the plasminogen activator inhibitor-1 gene.

Authors:  X Hua; X Liu; D O Ansari; H F Lodish
Journal:  Genes Dev       Date:  1998-10-01       Impact factor: 11.361

10.  How to measure and predict the molar absorption coefficient of a protein.

Authors:  C N Pace; F Vajdos; L Fee; G Grimsley; T Gray
Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

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  2 in total

1.  Correlation between growth differentiation factor-15 and collagen metabolism indicators in patients with myocardial infarction and heart failure.

Authors:  Fang-Fang Wang; Bao-Xia Chen; Hai-Yi Yu; Lin Mi; Zi-Jian Li; Wei Gao
Journal:  J Geriatr Cardiol       Date:  2016-01       Impact factor: 3.327

Review 2.  Dynamics of TGF-β/Smad signaling.

Authors:  Zhike Zi; Douglas A Chapnick; Xuedong Liu
Journal:  FEBS Lett       Date:  2012-04-09       Impact factor: 4.124

  2 in total

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