| Literature DB >> 20689809 |
Christa L Fischer Walker1, David Sack, Robert E Black.
Abstract
BACKGROUND: Diarrhea is an important cause of morbidity and mortality in all regions of the world and among all ages, yet little is known about the fraction of diarrhea episodes and deaths due to each pathogen. METHODOLOGY/PRINCIPALEntities:
Mesh:
Year: 2010 PMID: 20689809 PMCID: PMC2914743 DOI: 10.1371/journal.pntd.0000768
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Pathogens included in initial abstraction.
| Enterohaemorrhagic Escherichia coli (EHEC) |
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| Enteroinvasive Escherichia coli (EIEC) |
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| Enterotoxigenic Escherichia coli (ETEC) |
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| Enteropathogenic Escherichia coli (EPEC) |
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| Enteroaggregative Escherichia coli (EAEC) | Giardia spp. |
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| Calicivirus/Norwalk or related agents/Norovirus |
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Figure 1Results of systematic literature review.
Study characteristics of community based, inpatient, and outpatient studies included in the final analyses.
| Author (ref) | Country | Date of data collection | Study duration in mos. | Age range in yrs. | Sample size | Pathogens included in study |
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| Spencer | El Salvador | 1977 | 12 | ≥6 | 43 | ETEC |
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| Hossain | Bangladesh | 1975–1984 | 120 | ≥5 | 2488 |
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| Sitbon | Gabon | 1980–91 | 12 | ≥6 | 79 | Rotavirus |
| Nath | India | 1994–95 | 24 | ≥5 | 916 |
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| Gassama | Senegal | 1997–99 | 24 | ≥18 | 121 | EPEC/EAEC, |
| Lau | China | 2001–02 | 12 | ≥5 | 906 | Norovirus |
| MoezArdalan | Iran | 2001–02 | 12 | ≥5 | 312 |
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| Al-Gallas | Tunisia | 2001–04 | 36 | >18 | 73 | EHEC, EIEC, ETEC, EPEC/EAEC, |
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| Oberle | Bangladesh | 1975 | 12 | ≥5 | 1459 |
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| Zaman | Bangladesh | 1978–87 | 120 | ≥5 | 17129 |
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| Black | Bangladesh | 1977–79 | 24 | ≥10 | 5171 | ETEC, |
| Echeverria | Thailand | 1980–81 | 12 | >15 | 526 | ETEC, |
| Watson | UK | 1982 | 12 | ≥12 | 515 |
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| Poocharoen | Thailand | 1983–93 | 12 | 5–15 | 17 |
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| Baqui | Bangladesh | 1983–84 | 12 | ≥5 | 1569 | ETEC, |
| Wasfy | Egypt | 1986–93 | 96 | 5–23 | 6278 |
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| Brandonisio | Italy | 1987–94 | 84 | 9–14 | 28 |
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| Lim | Singapore | 1989–90 | 12 | ≥6 | 5181 |
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| Germani | New Caledonia | 1990–91 | 24 | ≥15 | 420 | ETEC, EPEC/EAEC, |
| Das | India | 1989–91 | 24 | ≥5 | 45 |
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| Vilchis-Guizar | Mexico | 1995 | 12 | 39–51 | 2379 |
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| Lau | China | 2001–2002 | 12 | ≥5 | 240 | Norovirus |
| Nagamani | India | 2003–06 | 48 | >5 | 906 |
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Study characteristics of studies meeting inclusion criteria but excluded from final analysis because the study population (i.e. community-based, inpatient, or outpatient) was not given or results were not stratified by group.
| Author (ref) | Country | Date of data collection | Study duration (months) | Age in yrs (mean ± range) | Sample size | Pathogens included in study |
| Echevarria | Thailand | 1982–83 | 12 | ≥5 | 177 | ETEC, |
| Chatterjee | India | 1982–83 | 24 | 5–14 | 46 | EIEC, EPEC, |
| Cabrita | Portugal | 1984–89 | 72 | ≥5 | 1012 |
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| Rahman | Bangladesh | 1985 | 12 | ≥6 | 577 |
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| Bingnan | Bangladesh | 1987–89 | 24 | ≥5 | 2370 | Rotavirus |
| Zvizdic | Bosnia | 1988–1991 | 48 | 5–7 | 70 | Rotavirus |
| Cassel-Beraud | Madagascar | 1988–89 | 12 | 6–14 | 113 | ETEC, |
| Zaman | Saudi Arabia | 1989–90 | 12 | ≥5 | 901 |
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| Libanorne | Italy | 1984–87 | 24 | 16–96 | 1681 | Giardia |
| Katsumata | Indonesia | 1992–93 | 12 | ≥5 | 211 |
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| Samonis | Greece | 1992–94 | 36 | ≥15 | 1420 | EPEC, |
| Simadibrata | Indonesia | 1995–2000 | 72 | (42±14) | 207 |
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| Akinyemi | Nigeria | 1995–96 | 12 | ≥6 | 642 | EHEC, EIEC, ETEC, EPEC, |
| Faruque | Bangladesh | 1996–2001 | 72 | ≥5 | 5779 | ETEC, EPEC, |
| Bern | Guatemala | 1997–98 | 12 | ≥5 | 514 |
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| Gambhir | India | 1997–2000 | 36 | ≥15 | 145 | Giardia, |
| Battikhi | Jordan | 1997–2001 | 48 | ≥5 | 560 | EPEC, |
| von Seidlein | Multi-site Asia | 2002 | 12 | >5 | 8253 |
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| Abreu-Acosta | Spain | 2002–2004 | 24 | ≥13 | 17 |
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| Hamedi | Iran | 2003 | 12 | 5–7 | 31 |
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| Uchida | Nepal | 2003–04 | 12 | ≥5 | 645 | Rotavirus |
| Amarilla | Paraguay | 2004–05 | 24 | 18–95 | 801 | Rotavirus |
| Feizabadi | Iran | 2004–05 | 12 | 5–14 | 79 |
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China, Thailand, Indonesia, Vietnam, Pakistan, Bangladesh.
Isolation of pathogens by inpatient and outpatient/community settings.
| Inpatient (15 total studies) | Outpatient/Community (8 total studies) | |||
| Pathogen | Mean (# of studies included) | Median [IQR] | Mean (# of studies included) | Median [IQR] |
| Adenovirus | – | – | 7 (1) | 7 [NA] |
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| 0.2 (1) | 0.2 [NA] | 0.8 (2) | 0.8 [0.4, 1.2] |
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| 4.1 (6) | 1.4 [0.5, 5.9] | 1.5 (2) | 1.5 [1.5, 1.6] |
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| 1.5 (2) | 1.5 [0.7, 2.2] | – | – |
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| 1.9 (3) | 1.3 [0.9, 2.2] | 6.4 (2) | 6.9 [4.9, 7.0] |
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| 3.1 (3) | 2.3 [2.1, 3.3] | 10.7 (1) | 10.7 [NA] |
| EPEC/EAEC | 4.0 (1) | 4.0 [NA] | 4.7 (2) | 4.7 [3.7, 5.6] |
| ETEC | 14.0 (4) | 9.5 [3.4, 20.2] | 5.9 (2) | 5.7 [3.5, 8.1] |
| EHEC | – | – | 0 (1) | 0 [NA] |
| EIEC | – | – | 4 (2) | 4 [2.7, 5.3] |
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| 2.5 (3) | 2.2 [2.2, 2.6] | 2.5 (2) | 2.5 [1.2, 3.7] |
| Norovirus | 10 (1) | 10 [NA] | 8.5 (1) | 8.5 [NA] |
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| 0.2 (1) | 0.2 [NA] | – | – |
| Rotavirus | 3.1 (3) | 4.1 [2.0, 4.7] | 2.1 (3) | 2.3 [1.9, 2.4] |
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| 8.4 (5) | 3.3 [2.3, 11.4] | 20.4 (2) | 20.4 [13.5, 27.3] |
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| 6.5 (8) | 4.3 [3.0, 10.2] | 19.6 (4) | 18.5 [10.3, 27.8] |
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| 15.3 (5) | 14.0 [11.9, 30.2] | – | – |
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| 1.6 (2) | 1.6 [0.8, 2.4] | – | – |
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| 0 (1) | 0 [NA] | 0 (1) | 0 [NA] |
Isolation of single vs. multiple pathogens among inpatients.
| Weighted mean % (# of studies) for low and middle income countries | One study representing high income countries | |||
| Pathogen | Single Pathogen Studies | 2–4 Pathogens Studies | >4 Pathogen Studies | Percent of patients positive for each pathogen |
| EPEC/EAEC | – | – | 4 (1) | |
| ETEC | – | – | 28.2 (4) | |
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| – | 2.7 (2) | 12.3 (2) | 11.5 |
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| 0.2 (1) | 3.7 (2) | 6.7 (4) | 3.1 |
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| 0.5 (2) | 2.3 (2) | 5.7 (2) | 14 |
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| 1.3 (3) | – | – | |
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| – | – | 0.2 | |
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| – | – | 0 (1) | |
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| – | – | 2.2 (3) | |
| Rotavirus | – | – | 3.9 (3) | |
| Norovirus | 10 (1) | – | – | |
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| 11.9 (1) | 30.2 (1) | 20.7 (3) | |
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| – | – | 0.3 (2) | |
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| – | – | 3.8 (3) | |
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| – | – | 0.2 | |
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| – | – | 0.2 (1) | 2.9 |
Isolation of single vs. multiple pathogens for outpatient studies.
| Weighted Mean (# of studies) | ||
| Pathogen | Single Pathogen | >4 Pathogens |
| EPEC/EAEC | – | 5.2 (2) |
| ETEC | 4.7 (1) | 4.6 (1) |
| EHEC | – | 0 (1) |
| EIEC | – | 2.6 (2) |
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| – | 17 (2) |
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| 35.4 (2) | 9.3 (2) |
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| – | 1.5 (2) |
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| 6.9 (1) | 2 (1) |
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| – | 1 (2) |
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| – | 0(1) |
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| – | 3.1 (2) |
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| – | 10.7 (1) |
| Rotavirus | 2.3 (1) | 2.1 (2) |
| Norovirus | 8.5 (1) | – |
| Adenovirus | – | 2.6 (1) |