Literature DB >> 20686190

Resonant activation in polymer translocation: new insights into the escape dynamics of molecules driven by an oscillating field.

N Pizzolato1, A Fiasconaro, D Persano Adorno, B Spagnolo.   

Abstract

The translocation of molecules across cellular membranes or through synthetic nanopores is strongly affected by thermal fluctuations. In this work we study how the dynamics of a polymer in a noisy environment changes when the translocation process is driven by an oscillating electric field. An improved version of the Rouse model for a flexible polymer has been adopted to mimic the molecular dynamics, by taking into account the harmonic interactions between adjacent monomers and the excluded-volume effect by introducing a Lennard-Jones potential between all beads. A bending recoil torque has also been included in our model. The polymer dynamics is simulated in a two-dimensional domain by numerically solving the Langevin equations of motion. Thermal fluctuations are taken into account by introducing a Gaussian uncorrelated noise. The mean first translocation time of the polymer centre of inertia shows a minimum as a function of the frequency of the oscillating forcing field. This finding represents the first evidence of the resonant activation behaviour in the dynamics of polymer translocation.

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Year:  2010        PMID: 20686190     DOI: 10.1088/1478-3975/7/3/034001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  5 in total

1.  Thermal and inertial resonances in DNA unzipping.

Authors:  A E Bergues-Pupo; J M Bergues; F Falo; A Fiasconaro
Journal:  Eur Phys J E Soft Matter       Date:  2015-05-22       Impact factor: 1.890

2.  Weak temporal signals can synchronize and accelerate the transition dynamics of biopolymers under tension.

Authors:  Won Kyu Kim; Changbong Hyeon; Wokyung Sung
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

3.  Active translocation of a semiflexible polymer assisted by an ATP-based molecular motor.

Authors:  A Fiasconaro; J J Mazo; F Falo
Journal:  Sci Rep       Date:  2017-06-23       Impact factor: 4.379

Review 4.  Enhancing Metastability by Dissipation and Driving in an Asymmetric Bistable Quantum System.

Authors:  Bernardo Spagnolo; Angelo Carollo; Davide Valenti
Journal:  Entropy (Basel)       Date:  2018-03-26       Impact factor: 2.524

5.  Impact of time delays and environmental noise on the extinction of a population dynamics model.

Authors:  Chun Zhang; Tao Yang; Shi-Xian Qu
Journal:  Eur Phys J B       Date:  2021-11-03       Impact factor: 1.500

  5 in total

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