Literature DB >> 20681591

Enol tautomers of Watson-Crick base pair models are metastable because of nuclear quantum effects.

Alejandro Pérez1, Mark E Tuckerman, Harold P Hjalmarson, O Anatole von Lilienfeld.   

Abstract

Intermolecular enol tautomers of Watson-Crick base pairs could emerge spontaneously via interbase double proton transfer. It has been hypothesized that their formation could be facilitated by thermal fluctuations and proton tunneling, and possibly be relevant to DNA damage. Theoretical and computational studies, assuming classical nuclei, have confirmed the dynamic stability of these rare tautomers. However, by accounting for nuclear quantum effects explicitly through Car-Parrinello path integral molecular dynamics calculations, we find the tautomeric enol form to be dynamically metastable, with lifetimes too insignificant to be implicated in DNA damage.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20681591     DOI: 10.1021/ja102004b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Proton transfer dynamics in the propionic acid dimer from path integral molecular dynamics calculations.

Authors:  Piotr Durlak; Zdzisław Latajka
Journal:  J Mol Model       Date:  2011-01-07       Impact factor: 1.810

2.  Quantum delocalization of protons in the hydrogen-bond network of an enzyme active site.

Authors:  Lu Wang; Stephen D Fried; Steven G Boxer; Thomas E Markland
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-12       Impact factor: 11.205

3.  Protonation preferentially stabilizes minor tautomers of the halouracils: IRMPD action spectroscopy and theoretical studies.

Authors:  K T Crampton; A I Rathur; Y-w Nei; G Berden; J Oomens; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2012-07-21       Impact factor: 3.109

4.  Direct observation of multiple tautomers of oxythiamine and their recognition by the thiamine pyrophosphate riboswitch.

Authors:  Vipender Singh; Chunte Sam Peng; Deyu Li; Koyel Mitra; Katherine J Silvestre; Andrei Tokmakoff; John M Essigmann
Journal:  ACS Chem Biol       Date:  2013-11-19       Impact factor: 5.100

5.  Learning the Quantum Centroid Force Correction in Molecular Systems: A Localized Approach.

Authors:  Chuixiong Wu; Ruye Li; Kuang Yu
Journal:  Front Mol Biosci       Date:  2022-05-19

6.  Quantum mechanical effects in acid-base chemistry.

Authors:  Xiaoliu Zhang; Shengmin Zhou; Fedra M Leonik; Lu Wang; Daniel G Kuroda
Journal:  Chem Sci       Date:  2022-05-19       Impact factor: 9.969

7.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

Review 8.  Randomness and multilevel interactions in biology.

Authors:  Marcello Buiatti; Giuseppe Longo
Journal:  Theory Biosci       Date:  2013-05-01       Impact factor: 1.919

9.  Capturing the Catalytic Proton of Dihydrofolate Reductase: Implications for General Acid-Base Catalysis.

Authors:  Qun Wan; Brad C Bennett; Troy Wymore; Zhihong Li; Mark A Wilson; Charles L Brooks; Paul Langan; Andrey Kovalevsky; Chris G Dealwis
Journal:  ACS Catal       Date:  2021-04-28       Impact factor: 13.084

10.  Inverse Temperature Dependence of Nuclear Quantum Effects in DNA Base Pairs.

Authors:  Wei Fang; Ji Chen; Mariana Rossi; Yexin Feng; Xin-Zheng Li; Angelos Michaelides
Journal:  J Phys Chem Lett       Date:  2016-05-24       Impact factor: 6.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.