Literature DB >> 20681576

(TD-)DFT calculation of vibrational and vibronic spectra of riboflavin in solution.

Bastian Klaumünzer1, Dominik Kröner, Peter Saalfrank.   

Abstract

The photophysics and photochemistry of flavin molecules are of great interest due to their role for the biological function of flavoproteins. An important analysis tool toward the understanding of the initial photoexcitation step of flavins is electronic and vibrational spectroscopy, both in frequency and time domains. Here we present quantum chemical [(time-dependent) density functional theory ((TD-)DFT)] calculations for vibrational spectra of riboflavin, the parent molecule of biological blue-light receptor chromophores, in its electronic ground (S(0)) and lowest singlet excited states (S(1)). Further, vibronic absorption spectra for the S(0) --> S(1) transition and vibronic emission spectra for the reverse process are calculated, both including mode mixing. Solvent effects are partially accounted for by using a polarizable continuum model (PCM) or a conductor-like screening model (COSMO). Calculated vibrational and electronic spectra are in good agreement with measured ones and help to assign the experimental signals arising from photoexcitation of flavins. In particular, upon photoexcitation a loss of double bond character in the polar region of the ring system is observed which leads to vibronic fine structure in the electronic spectra. Besides vibronic effects, solvent effects are important for understanding the photophysics of flavins in solution quantitatively.

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Year:  2010        PMID: 20681576     DOI: 10.1021/jp100642c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Modulation of the flavin-protein interactions in NADH peroxidase and mercuric ion reductase: a resonance Raman study.

Authors:  Julie Keirsse-Haquin; Thierry Picaud; Luc Bordes; Adrienne Gomez de Gracia; Alain Desbois
Journal:  Eur Biophys J       Date:  2017-09-09       Impact factor: 1.733

2.  The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.

Authors:  Katrin Röllen; Joachim Granzin; Alina Remeeva; Mehdi D Davari; Thomas Gensch; Vera V Nazarenko; Kirill Kovalev; Andrey Bogorodskiy; Valentin Borshchevskiy; Stefanie Hemmer; Ulrich Schwaneberg; Valentin Gordeliy; Karl-Erich Jaeger; Renu Batra-Safferling; Ivan Gushchin; Ulrich Krauss
Journal:  J Biol Chem       Date:  2021-04-13       Impact factor: 5.157

3.  QM/MM Investigation of the Spectroscopic Properties of the Fluorophore of Bacterial Luciferase.

Authors:  Germano Giuliani; Federico Melaccio; Samer Gozem; Andrea Cappelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2021-01-15       Impact factor: 6.578

4.  Absorption and Emission Spectra of a Flexible Dye in Solution: a Computational Time-Dependent Approach.

Authors:  Nicola De Mitri; Susanna Monti; Giacomo Prampolini; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-10-08       Impact factor: 6.006

5.  QM calculations predict the energetics and infrared spectra of transient glutamine isomers in LOV photoreceptors.

Authors:  Prokopis C Andrikopoulos; Aditya S Chaudhari; Yingliang Liu; Patrick E Konold; John T M Kennis; Bohdan Schneider; Gustavo Fuertes
Journal:  Phys Chem Chem Phys       Date:  2021-06-30       Impact factor: 3.676

6.  Structural Characterization, DFT Calculation, NCI, Scan-Rate Analysis and Antifungal Activity against Botrytis cinerea of (E)-2-{[(2-Aminopyridin-2-yl)imino]-methyl}-4,6-di-tert-butylphenol (Pyridine Schiff Base).

Authors:  Alexander Carreño; Dayán Páez-Hernández; Plinio Cantero-López; César Zúñiga; Jan Nevermann; Angélica Ramírez-Osorio; Manuel Gacitúa; Poldie Oyarzún; Felipe Sáez-Cortez; Rubén Polanco; Carolina Otero; Juan A A Fuentes
Journal:  Molecules       Date:  2020-06-13       Impact factor: 4.411

7.  Spectroscopic, thermodynamic and computational evidence of the locations of the FADs in the nitrogen fixation-associated electron transfer flavoprotein.

Authors:  Nishya Mohamed-Raseek; H Diessel Duan; Peter Hildebrandt; Maria Andrea Mroginski; Anne-Frances Miller
Journal:  Chem Sci       Date:  2019-06-28       Impact factor: 9.825

  7 in total

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