Literature DB >> 20680853

Beyond DNA: zinc finger domains as RNA-binding modules.

Josep Font1, Joel P Mackay.   

Abstract

Over the last 25 years, we have learned that many structural classes of zinc-binding domains (zinc fingers, ZFs) exist and it has become clear that the molecular functions of these domains are by no means limited to the sequence-specific recognition of double-stranded DNA. For example, ZFs can act as protein recognition or RNA-binding modules, and some domains can exhibit more than one function. In this chapter we describe the progress that has been made in understanding the role of ZF domains as RNA-recognition modules, and we speculate about both the prevalence of such functions and the prospects for creating designer ZFs that target RNA.

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Year:  2010        PMID: 20680853     DOI: 10.1007/978-1-60761-753-2_29

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

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Authors:  Israel Ausin; Maxim V C Greenberg; Dhirendra K Simanshu; Christopher J Hale; Ajay A Vashisht; Stacey A Simon; Tzuu-fen Lee; Suhua Feng; Sophia D Española; Blake C Meyers; James A Wohlschlegel; Dinshaw J Patel; Steven E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-16       Impact factor: 11.205

2.  Phase separation of HRLP regulates flowering time in Arabidopsis.

Authors:  Yu Zhang; Sheng Fan; Changmei Hua; Zhi Wei Norman Teo; Jian Xuan Kiang; Lisha Shen; Hao Yu
Journal:  Sci Adv       Date:  2022-06-22       Impact factor: 14.957

Review 3.  How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.

Authors:  Meredith Corley; Margaret C Burns; Gene W Yeo
Journal:  Mol Cell       Date:  2020-04-02       Impact factor: 17.970

Review 4.  The thermodynamics of protein interactions with essential first row transition metals.

Authors:  Fadi Bou-Abdallah; Thomas R Giffune
Journal:  Biochim Biophys Acta       Date:  2015-11-10

5.  A Heterologous Cell Model for Studying the Role of T-Cell Intracellular Antigen 1 in Welander Distal Myopathy.

Authors:  Isabel Carrascoso; Carmen Sánchez-Jiménez; Elena Silion; José Alcalde; José M Izquierdo
Journal:  Mol Cell Biol       Date:  2018-12-11       Impact factor: 4.272

6.  Inherited deficiency of stress granule ZNFX1 in patients with monocytosis and mycobacterial disease.

Authors:  Tom Le Voyer; Anna-Lena Neehus; Rui Yang; Masato Ogishi; Jérémie Rosain; Fayhan Alroqi; Maha Alshalan; Sophie Blumental; Fatima Al Ali; Taushif Khan; Manar Ata; Laurence Rozen; Anne Demulder; Paul Bastard; Conor Gruber; Manon Roynard; Yoann Seeleuthener; Franck Rapaport; Benedetta Bigio; Maya Chrabieh; Danielle Sng; Laureline Berteloot; Nathalie Boddaert; Flore Rozenberg; Saleh Al-Muhsen; Aida Bertoli-Avella; Laurent Abel; Dusan Bogunovic; Nico Marr; Davood Mansouri; Fuad Al Mutairi; Vivien Béziat; Dominique Weil; Seyed Alireza Mahdaviani; Alina Ferster; Shen-Ying Zhang; Bruno Reversade; Stéphanie Boisson-Dupuis; Jean-Laurent Casanova; Jacinta Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-13       Impact factor: 11.205

7.  A rapid method for assessing the RNA-binding potential of a protein.

Authors:  K Bendak; F E Loughlin; V Cheung; M R O'Connell; M Crossley; J P Mackay
Journal:  Nucleic Acids Res       Date:  2012-04-03       Impact factor: 16.971

8.  From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces.

Authors:  Shula Shazman; Gershon Elber; Yael Mandel-Gutfreund
Journal:  Nucleic Acids Res       Date:  2011-06-21       Impact factor: 16.971

9.  Neural network modeling of differential binding between wild-type and mutant CTCF reveals putative binding preferences for zinc fingers 1-2.

Authors:  Irene M Kaplow; Abhimanyu Banerjee; Chuan Sheng Foo
Journal:  BMC Genomics       Date:  2022-04-12       Impact factor: 3.969

10.  Comprehensive transcriptome profiling and functional analysis of the frog (Bombina maxima) immune system.

Authors:  Feng Zhao; Chao Yan; Xuan Wang; Yang Yang; Guangyin Wang; Wenhui Lee; Yang Xiang; Yun Zhang
Journal:  DNA Res       Date:  2013-08-13       Impact factor: 4.458

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