Literature DB >> 20677374

ATDB 2.0: A database integrated toxin-ion channel interaction data.

Quanze He1, Wenjun Han, Quanyuan He, Linju Huo, Jingjing Zhang, Yong Lin, Ping Chen, Songping Liang.   

Abstract

We have developed an updated version of the Animal Toxin Database (ATDB 2.0) that provides a new bioinformatics resource for analyzing toxin-channel (T-C) interactions. Data on more than 54,000 T-C interactions, including 9193 high-confidence interactions, has been extracted, formatted and mapped to toxin and ion channel databases. The interaction data can be accessed easily through a new network browser on the website at http://protchem.hunnu.edu.cn/toxin. This resource may be useful for sequence pattern recognition and prediction of the function of new toxins.

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Year:  2010        PMID: 20677374     DOI: 10.1016/j.toxicon.2010.05.013

Source DB:  PubMed          Journal:  Toxicon        ISSN: 0041-0101            Impact factor:   3.033


  6 in total

1.  The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data.

Authors:  Florence Jungo; Lydie Bougueleret; Ioannis Xenarios; Sylvain Poux
Journal:  Toxicon       Date:  2012-03-23       Impact factor: 3.033

2.  Structure and function of hainantoxin-III, a selective antagonist of neuronal tetrodotoxin-sensitive voltage-gated sodium channels isolated from the Chinese bird spider Ornithoctonus hainana.

Authors:  Zhonghua Liu; Tianfu Cai; Qi Zhu; Meichun Deng; Jiayan Li; Xi Zhou; Fan Zhang; Dan Li; Jing Li; Yu Liu; Weijun Hu; Songping Liang
Journal:  J Biol Chem       Date:  2013-05-23       Impact factor: 5.157

Review 3.  Bioinformatics-Aided Venomics.

Authors:  Quentin Kaas; David J Craik
Journal:  Toxins (Basel)       Date:  2015-06-11       Impact factor: 4.546

4.  The venom gland transcriptome of Latrodectus tredecimguttatus revealed by deep sequencing and cDNA library analysis.

Authors:  Quanze He; Zhigui Duan; Ying Yu; Zhen Liu; Zhonghua Liu; Songping Liang
Journal:  PLoS One       Date:  2013-11-28       Impact factor: 3.240

5.  β-Ginkgotides: Hyperdisulfide-constrained peptides from Ginkgo biloba.

Authors:  Ka H Wong; Wei Liang Tan; Tianshu Xiao; James P Tam
Journal:  Sci Rep       Date:  2017-07-21       Impact factor: 4.379

6.  Prediction of presynaptic and postsynaptic neurotoxins by combining various Chou's pseudo components.

Authors:  Haiyan Huo; Tao Li; Shiyuan Wang; Yingli Lv; Yongchun Zuo; Lei Yang
Journal:  Sci Rep       Date:  2017-07-19       Impact factor: 4.379

  6 in total

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