Literature DB >> 20671149

ExpressionView--an interactive viewer for modules identified in gene expression data.

Andreas Lüscher1, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann.   

Abstract

SUMMARY: ExpressionView is an R package that provides an interactive graphical environment to explore transcription modules identified in gene expression data. A sophisticated ordering algorithm is used to present the modules with the expression in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual modules and access biologically relevant metadata associated with them. AVAILABILITY: http://www.unil.ch/cbg/ExpressionView. Screenshots, tutorials and sample data sets can be found on the ExpressionView web site.

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Year:  2010        PMID: 20671149     DOI: 10.1093/bioinformatics/btq334

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  Using transcription modules to identify expression clusters perturbed in Williams-Beuren syndrome.

Authors:  Charlotte N Henrichsen; Gábor Csárdi; Marie-Thérèse Zabot; Carmela Fusco; Sven Bergmann; Giuseppe Merla; Alexandre Reymond
Journal:  PLoS Comput Biol       Date:  2011-01-20       Impact factor: 4.475

2.  Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Authors:  Heinz Stockinger; Adrian M Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; Olivier Michielin; Patricia M Palagi; Jacques Rougemont; Torsten Schwede; Christian von Mering; Erik van Nimwegen; Daniel Walther; Ioannis Xenarios; Mihaela Zavolan; Evgeny M Zdobnov; Vincent Zoete; Ron D Appel
Journal:  Nucleic Acids Res       Date:  2014-05-03       Impact factor: 16.971

3.  An evaluation study of biclusters visualization techniques of gene expression data.

Authors:  Haithem Aouabed; Mourad Elloumi; Rodrigo Santamaría
Journal:  J Integr Bioinform       Date:  2021-10-27
  3 in total

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