Literature DB >> 20665642

The virus as metabolic engineer.

Nathaniel D Maynard1, Miriam V Gutschow, Elsa W Birch, Markus W Covert.   

Abstract

Recent genome-wide screens of host genetic requirements for viral infection have reemphasized the critical role of host metabolism in enabling the production of viral particles. In this review, we highlight the metabolic aspects of viral infection found in these studies, and focus on the opportunities these requirements present for metabolic engineers. In particular, the objectives and approaches that metabolic engineers use are readily comparable to the behaviors exhibited by viruses during infection. As a result, metabolic engineers have a unique perspective that could lead to novel and effective methods to combat viral infection.

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Year:  2010        PMID: 20665642      PMCID: PMC3004434          DOI: 10.1002/biot.201000080

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  82 in total

1.  Regulation of gene expression in flux balance models of metabolism.

Authors:  M W Covert; C H Schilling; B Palsson
Journal:  J Theor Biol       Date:  2001-11-07       Impact factor: 2.691

2.  The reaction of influenza viruses with guinea pig polymorphonuclear leucocytes. II. The reduction of white blood cell glycolysis by influenza viruses and receptor-destroying enzyme (RDE).

Authors:  T N FISHER; H S GINSBERG
Journal:  Virology       Date:  1956-10       Impact factor: 3.616

3.  Integrating high-throughput and computational data elucidates bacterial networks.

Authors:  Markus W Covert; Eric M Knight; Jennifer L Reed; Markus J Herrgard; Bernhard O Palsson
Journal:  Nature       Date:  2004-05-06       Impact factor: 49.962

4.  Mayaro virus infection alters glucose metabolism in cultured cells through activation of the enzyme 6-phosphofructo 1-kinase.

Authors:  Tatiana El-Bacha; Maíra M T Menezes; Melissa C Azevedo e Silva; Mauro Sola-Penna; Andrea T Da Poian
Journal:  Mol Cell Biochem       Date:  2004-11       Impact factor: 3.396

5.  Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication.

Authors:  Alexander Karlas; Nikolaus Machuy; Yujin Shin; Klaus-Peter Pleissner; Anita Artarini; Dagmar Heuer; Daniel Becker; Hany Khalil; Lesley A Ogilvie; Simone Hess; André P Mäurer; Elke Müller; Thorsten Wolff; Thomas Rudel; Thomas F Meyer
Journal:  Nature       Date:  2010-01-17       Impact factor: 49.962

6.  Mitochondrial and bioenergetic dysfunction in human hepatic cells infected with dengue 2 virus.

Authors:  Tatiana El-Bacha; Victor Midlej; Ana Paula Pereira da Silva; Leandro Silva da Costa; Marlene Benchimol; Antonio Galina; Andrea T Da Poian
Journal:  Biochim Biophys Acta       Date:  2007-09-15

7.  High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints.

Authors:  Eliane Fischer; Nicola Zamboni; Uwe Sauer
Journal:  Anal Biochem       Date:  2004-02-15       Impact factor: 3.365

Review 8.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

9.  siRNA and shRNA screens advance key understanding of host factors required for HIV-1 replication.

Authors:  Kin-Hang Kok; Ting Lei; Dong-Yan Jin
Journal:  Retrovirology       Date:  2009-08-27       Impact factor: 4.602

10.  Discovery of insect and human dengue virus host factors.

Authors:  October M Sessions; Nicholas J Barrows; Jayme A Souza-Neto; Timothy J Robinson; Christine L Hershey; Mary A Rodgers; Jose L Ramirez; George Dimopoulos; Priscilla L Yang; James L Pearson; Mariano A Garcia-Blanco
Journal:  Nature       Date:  2009-04-23       Impact factor: 49.962

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  35 in total

1.  The absence or presence of a lytic coliphage affects the response of Escherichia coli to heat, chlorine, or UV exposure.

Authors:  Ekwu M Ameh; Sean Tyrrel; Jim Harris; Athanasios Ignatiou; Elena Orlova; Andreas Nocker
Journal:  Folia Microbiol (Praha)       Date:  2018-03-15       Impact factor: 2.099

Review 2.  Metabolomics Signatures of SARS-CoV-2 Infection.

Authors:  Babak Arjmand; Bagher Larijani; Sepideh Alavi-Moghadam; Peyvand Parhizkar-Roudsari; Mostafa Rezaei-Tavirani; Akram Tayanloo-Beik; Parisa Goodarzi; Neda Mehrdad; Fereshteh Mohamadi-Jahani
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

3.  Energetic cost of building a virus.

Authors:  Gita Mahmoudabadi; Ron Milo; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-16       Impact factor: 11.205

4.  Development and evaluation of a host-targeted antiviral that abrogates herpes simplex virus replication through modulation of arginine-associated metabolic pathways.

Authors:  Maria Dulfary Sanchez; Augusto C Ochoa; Timothy P Foster
Journal:  Antiviral Res       Date:  2016-05-15       Impact factor: 5.970

5.  Activity increase in respiratory chain complexes by rubella virus with marginal induction of oxidative stress.

Authors:  C Claus; K Schönefeld; D Hübner; S Chey; U Reibetanz; U G Liebert
Journal:  J Virol       Date:  2013-05-29       Impact factor: 5.103

6.  Mitochondrial dysfunction in rabies virus infection of neurons.

Authors:  Thamir Alandijany; Wafa Kammouni; Subir K Roy Chowdhury; Paul Fernyhough; Alan C Jackson
Journal:  J Neurovirol       Date:  2013-11-26       Impact factor: 2.643

7.  Editorial overview: Viruses and cell metabolism.

Authors:  Richard E Lloyd; Mary K Estes
Journal:  Curr Opin Virol       Date:  2016-08       Impact factor: 7.090

8.  Toward system-level understanding of baculovirus-host cell interactions: from molecular fundamental studies to large-scale proteomics approaches.

Authors:  Francisca Monteiro; Nuno Carinhas; Manuel J T Carrondo; Vicente Bernal; Paula M Alves
Journal:  Front Microbiol       Date:  2012-11-09       Impact factor: 5.640

9.  Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation.

Authors:  Elsa W Birch; Nicholas A Ruggero; Markus W Covert
Journal:  PLoS Comput Biol       Date:  2012-10-18       Impact factor: 4.475

10.  Bioenergetics of murine lungs infected with respiratory syncytial virus.

Authors:  Ahmed R Alsuwaidi; Sheela Benedict; Jose Kochiyil; Farah Mustafa; Stacey M Hartwig; Saeeda Almarzooqi; Alia Albawardi; Tahir A Rizvi; Steven M Varga; Abdul-Kader Souid
Journal:  Virol J       Date:  2013-01-15       Impact factor: 4.099

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