Literature DB >> 20664718

An Information Matrix Prior for Bayesian Analysis in Generalized Linear Models with High Dimensional Data.

Mayetri Gupta1, Joseph G Ibrahim.   

Abstract

An important challenge in analyzing high dimensional data in regression settings is that of facing a situation in which the number of covariates p in the model greatly exceeds the sample size n (sometimes termed the "p > n" problem). In this article, we develop a novel specification for a general class of prior distributions, called Information Matrix (IM) priors, for high-dimensional generalized linear models. The priors are first developed for settings in which p < n, and then extended to the p > n case by defining a ridge parameter in the prior construction, leading to the Information Matrix Ridge (IMR) prior. The IM and IMR priors are based on a broad generalization of Zellner's g-prior for Gaussian linear models. Various theoretical properties of the prior and implied posterior are derived including existence of the prior and posterior moment generating functions, tail behavior, as well as connections to Gaussian priors and Jeffreys' prior. Several simulation studies and an application to a nucleosomal positioning data set demonstrate its advantages over Gaussian, as well as g-priors, in high dimensional settings.

Entities:  

Year:  2009        PMID: 20664718      PMCID: PMC2909687     

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  5 in total

Review 1.  Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome.

Authors:  R D Kornberg; Y Lorch
Journal:  Cell       Date:  1999-08-06       Impact factor: 41.582

Review 2.  Chromatin modification and disease.

Authors:  C A Johnson
Journal:  J Med Genet       Date:  2000-12       Impact factor: 6.318

3.  Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning.

Authors:  A Thåström; L M Bingham; J Widom
Journal:  J Mol Biol       Date:  2004-05-07       Impact factor: 5.469

4.  Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data.

Authors:  Ka Yee Yeung; Roger E Bumgarner; Adrian E Raftery
Journal:  Bioinformatics       Date:  2005-02-15       Impact factor: 6.937

5.  Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters.

Authors:  Gregory J Hogan; Cheol-Koo Lee; Jason D Lieb
Journal:  PLoS Genet       Date:  2006-08-08       Impact factor: 5.917

  5 in total
  3 in total

1.  Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.

Authors:  Tapesh Santra; Walter Kolch; Boris N Kholodenko
Journal:  BMC Syst Biol       Date:  2013-07-06

Review 2.  A bayesian framework that integrates heterogeneous data for inferring gene regulatory networks.

Authors:  Tapesh Santra
Journal:  Front Bioeng Biotechnol       Date:  2014-05-20

3.  A New Regression Model for the Analysis of Overdispersed and Zero-Modified Count Data.

Authors:  Wesley Bertoli; Katiane S Conceição; Marinho G Andrade; Francisco Louzada
Journal:  Entropy (Basel)       Date:  2021-05-21       Impact factor: 2.524

  3 in total

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