Literature DB >> 20655358

Dynamic-module redundancy confers robustness to the gene regulatory network involved in hair patterning of Arabidopsis epidermis.

Mariana Benítez1, Elena R Alvarez-Buylla.   

Abstract

Redundancy among dynamic modules is emerging as a potentially generic trait in gene regulatory networks. Moreover, module redundancy could play an important role in network robustness to perturbations. We explored the effect of dynamic-module redundancy in the networks associated to hair patterning in Arabidopsis root and leaf epidermis. Recent studies have put forward several dynamic modules belonging to these networks. We defined these modules in a discrete dynamical framework that was previously reported. Then, we addressed whether these modules are sufficient or necessary for recovering epidermal cell types and patterning. After defining two quantitative estimates of the system's robustness, we also compared the robustness of each separate module with that of a network coupling all the leaf or root modules. We found that, considering certain assumptions, all the dynamic modules proposed so far are sufficient on their own for pattern formation, but reinforce each other during epidermal development. Furthermore, we found that networks of coupled modules are more robust to perturbations than single modules. These results suggest that dynamic-module redundancy might be an important trait in gene regulatory networks and point at central questions regarding network evolution, module coupling, pattern robustness and the evolution of development.
Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

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Year:  2010        PMID: 20655358     DOI: 10.1016/j.biosystems.2010.07.007

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  13 in total

1.  Mutually reinforcing patterning mechanisms.

Authors:  Elena R Alvarez-Buylla; Mariana Benítez; Carlos Espinosa-Soto
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-06       Impact factor: 94.444

2.  Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche.

Authors:  Eugenio Azpeitia; Mariana Benítez; Iliusi Vega; Carlos Villarreal; Elena R Alvarez-Buylla
Journal:  BMC Syst Biol       Date:  2010-10-05

Review 3.  Retroactivity in the Context of Modularly Structured Biomolecular Systems.

Authors:  Libertad Pantoja-Hernández; Juan Carlos Martínez-García
Journal:  Front Bioeng Biotechnol       Date:  2015-06-17

Review 4.  Mechanical forces as information: an integrated approach to plant and animal development.

Authors:  Valeria Hernández-Hernández; Denisse Rueda; Lorena Caballero; Elena R Alvarez-Buylla; Mariana Benítez
Journal:  Front Plant Sci       Date:  2014-06-10       Impact factor: 5.753

5.  A model of the regulatory network involved in the control of the cell cycle and cell differentiation in the Caenorhabditis elegans vulva.

Authors:  Nathan Weinstein; Elizabeth Ortiz-Gutiérrez; Stalin Muñoz; David A Rosenblueth; Elena R Álvarez-Buylla; Luis Mendoza
Journal:  BMC Bioinformatics       Date:  2015-03-13       Impact factor: 3.169

6.  Evolving robust gene regulatory networks.

Authors:  Nasimul Noman; Taku Monjo; Pablo Moscato; Hitoshi Iba
Journal:  PLoS One       Date:  2015-01-23       Impact factor: 3.240

7.  A Model Analysis of Mechanisms for Radial Microtubular Patterns at Root Hair Initiation Sites.

Authors:  Pawel Krupinski; Behruz Bozorg; André Larsson; Stefano Pietra; Markus Grebe; Henrik Jönsson
Journal:  Front Plant Sci       Date:  2016-10-28       Impact factor: 5.753

Review 8.  Regulation of epidermal cell fate in Arabidopsis roots: the importance of multiple feedback loops.

Authors:  John Schiefelbein; Ling Huang; Xiaohua Zheng
Journal:  Front Plant Sci       Date:  2014-02-17       Impact factor: 5.753

9.  The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.

Authors:  Ramin Bahmani; Dong G Kim; Jin A Kim; Seongbin Hwang
Journal:  Front Plant Sci       Date:  2016-11-23       Impact factor: 5.753

10.  The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks.

Authors:  Eugenio Azpeitia; Stalin Muñoz; Daniel González-Tokman; Mariana Esther Martínez-Sánchez; Nathan Weinstein; Aurélien Naldi; Elena R Álvarez-Buylla; David A Rosenblueth; Luis Mendoza
Journal:  Sci Rep       Date:  2017-02-10       Impact factor: 4.379

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