Literature DB >> 20653767

A call for standardized classification of metagenome projects.

Natalia Ivanova1, Susannah G Tringe, Konstantinos Liolios, Wen-Tso Liu, Norman Morrison, Philip Hugenholtz, Nikos C Kyrpides.   

Abstract

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Year:  2010        PMID： 20653767     DOI： 10.1111/j.1462-2920.2010.02270.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN： 1462-2912            Impact factor:   5.491


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  18 in total

1.  The future of microbial metagenomics (or is ignorance bliss?).

Authors:  Jack A Gilbert; Folker Meyer; Mark J Bailey
Journal:  ISME J       Date:  2010-11-25       Impact factor: 10.302

2.  Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data.

Authors:  David Paez-Espino; Georgios A Pavlopoulos; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nat Protoc       Date:  2017-07-27       Impact factor: 13.491

3.  Uncovering Earth's virome.

Authors:  David Paez-Espino; Emiley A Eloe-Fadrosh; Georgios A Pavlopoulos; Alex D Thomas; Marcel Huntemann; Natalia Mikhailova; Edward Rubin; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nature       Date:  2016-08-17       Impact factor: 49.962

4.  The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

Authors:  T B K Reddy; Alex D Thomas; Dimitri Stamatis; Jon Bertsch; Michelle Isbandi; Jakob Jansson; Jyothi Mallajosyula; Ioanna Pagani; Elizabeth A Lobos; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 16.971

5.  Genomes OnLine Database (GOLD) v.8: overview and updates.

Authors:  Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Jagadish Chandrabose Sundaramurthi; Janey Lee; Mahathi Kandimalla; I-Min A Chen; Nikos C Kyrpides; T B K Reddy
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

6.  IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Authors:  Simon Roux; David Páez-Espino; I-Min A Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T B K Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y Neches; Tanja Woyke; Natalia N Ivanova; Emiley A Eloe-Fadrosh; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

7.  The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.

Authors:  Ioanna Pagani; Konstantinos Liolios; Jakob Jansson; I-Min A Chen; Tatyana Smirnova; Bahador Nosrat; Victor M Markowitz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

8.  IMG/M: the integrated metagenome data management and comparative analysis system.

Authors:  Victor M Markowitz; I-Min A Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Anna Ratner; Biju Jacob; Amrita Pati; Marcel Huntemann; Konstantinos Liolios; Ioanna Pagani; Iain Anderson; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2011-11-15       Impact factor: 16.971

9.  Exploration of noncoding sequences in metagenomes.

Authors:  Fabián Tobar-Tosse; Adrián C Rodríguez; Patricia E Vélez; María M Zambrano; Pedro A Moreno
Journal:  PLoS One       Date:  2013-03-25       Impact factor: 3.240

10.  IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.

Authors:  Victor M Markowitz; I-Min A Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Biju Jacob; Anna Ratner; Konstantinos Liolios; Ioanna Pagani; Marcel Huntemann; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal:  PLoS One       Date:  2012-07-05       Impact factor: 3.240
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