Literature DB >> 20648569

Targeted projection NMR spectroscopy for unambiguous metabolic profiling of complex mixtures.

Clément Pontoizeau1, Torsten Herrmann, Pierre Toulhoat, Bénédicte Elena-Herrmann, Lyndon Emsley.   

Abstract

Unambiguous identification of individual metabolites present in complex mixtures such as biofluids constitutes a crucial prerequisite for quantitative metabolomics, toward better understanding of biochemical processes in living systems. Increasing the dimensionality of a given NMR correlation experiment is the natural solution for resolving spectral overlap. However, in the context of metabolites, natural abundance acquisition of (1)H and (13)C NMR data virtually excludes the use of higher dimensional NMR experiments (3D, 4D, etc.) that would require unrealistically long acquisition times. Here, we introduce projection NMR techniques for studies of complex mixtures, and we show how discrete sets of projection spectra from higher dimensional NMR experiments are obtained in a reasonable time frame, in order to capture essential information necessary to resolve assignment ambiguities caused by signal overlap in conventional 2D NMR spectra. We determine optimal projection angles where given metabolite resonances will have the least overlap, to obtain distinct metabolite assignment in complex mixtures. The method is demonstrated for a model mixture composition made of ornithine, putrescine and arginine for which acquisition of a single 2D projection of a 3D (1)H-(13)C TOCSY-HSQC spectrum allows to disentangle the metabolite signals and to access to complete profiling of this model mixture in the targeted 2D projection plane. 2010 John Wiley & Sons, Ltd.

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Year:  2010        PMID: 20648569     DOI: 10.1002/mrc.2661

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  6 in total

1.  MetaboID: a graphical user interface package for assignment of 1H NMR spectra of bodyfluids and tissues.

Authors:  Neil MacKinnon; Bagganahalli S Somashekar; Pratima Tripathi; Wencheng Ge; Thekkelnaycke M Rajendiran; Arul M Chinnaiyan; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2012-11-21       Impact factor: 2.229

2.  Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2011-08-30       Impact factor: 6.986

Review 3.  Multidimensional approaches to NMR-based metabolomics.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2013-11-22       Impact factor: 6.986

4.  MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.

Authors:  Dan Tulpan; Serge Léger; Luc Belliveau; Adrian Culf; Miroslava Cuperlović-Culf
Journal:  BMC Bioinformatics       Date:  2011-10-14       Impact factor: 3.169

Review 5.  Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites.

Authors:  Jia Liu; Lawrence Litt; Mark R Segal; Mark J S Kelly; Jeffrey G Pelton; Myungwon Kim
Journal:  Int J Mol Sci       Date:  2011-09-28       Impact factor: 5.923

6.  NMR Analysis of Carboxylate Isotopomers of 13C-Metabolites by Chemoselective Derivatization with 15N-Cholamine.

Authors:  Sara Vicente-Muñoz; Penghui Lin; Teresa W-M Fan; Andrew N Lane
Journal:  Anal Chem       Date:  2021-04-21       Impact factor: 8.008

  6 in total

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