Literature DB >> 20646263

Genome-wide association studies in Plasmodium species.

Bridget Penman1, Caroline Buckee, Sunetra Gupta, Sean Nee.   

Abstract

Genome-wide association studies (GWAS) look for correlations between traits of interest and genetic markers spread throughout the genome. A recent study in BMC Genetics has found that populations of the malaria parasite Plasmodium vivax should be amenable to GWAS searching for a genetic basis of parasite pathogenicity. Geographical substructure in populations may, however, prove a problem in interpreting the results.

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Mesh：

Year:  2010        PMID： 20646263      PMCID： PMC2903549          DOI： 10.1186/1741-7007-8-90

Source DB:  PubMed          Journal:  BMC Biol        ISSN： 1741-7007            Impact factor:   7.431


  13 in total

1.  No adjustments are needed for multiple comparisons.

Authors:  K J Rothman
Journal:  Epidemiology       Date:  1990-01       Impact factor: 4.822

2.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

Review 3.  Extending genome-wide association studies to copy-number variation.

Authors:  Steven A McCarroll
Journal:  Hum Mol Genet       Date:  2008-10-15       Impact factor: 6.150

4.  Identification of the Plasmodium vivax mdr-like gene (pvmdr1) and analysis of single-nucleotide polymorphisms among isolates from different areas of endemicity.

Authors:  Sara Brega; Benoit Meslin; Frédérique de Monbrison; Carlo Severini; Luigi Gradoni; Rachanee Udomsangpetch; Inge Sutanto; François Peyron; Stéphane Picot
Journal:  J Infect Dis       Date:  2004-12-09       Impact factor: 5.226

5.  Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum.

Authors:  T J Anderson; B Haubold; J T Williams; J G Estrada-Franco; L Richardson; R Mollinedo; M Bockarie; J Mokili; S Mharakurwa; N French; J Whitworth; I D Velez; A H Brockman; F Nosten; M U Ferreira; K P Day
Journal:  Mol Biol Evol       Date:  2000-10       Impact factor: 16.240

6.  Inferred relatedness and heritability in malaria parasites.

Authors:  Tim J C Anderson; Jeff T Williams; Shalini Nair; Daniel Sudimack; Marion Barends; Anchalee Jaidee; Ric N Price; François Nosten
Journal:  Proc Biol Sci       Date:  2010-04-14       Impact factor: 5.349

7.  Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies.

Authors:  Pamela Orjuela-Sánchez; Nadira D Karunaweera; Mônica da Silva-Nunes; Natal S da Silva; Kézia K G Scopel; Raquel M Gonçalves; Chanaki Amaratunga; Juliana M Sá; Duong Socheat; Rick M Fairhust; Sharmini Gunawardena; Thuraisamy Thavakodirasah; Gawrie L N Galapaththy; Rabindra Abeysinghe; Fumihiko Kawamoto; Dyann F Wirth; Marcelo U Ferreira
Journal:  BMC Genet       Date:  2010-07-13       Impact factor: 2.797

8.  Recombination hotspots and population structure in Plasmodium falciparum.

Authors:  Jianbing Mu; Philip Awadalla; Junhui Duan; Kate M McGee; Deirdre A Joy; Gilean A T McVean; Xin-zhuan Su
Journal:  PLoS Biol       Date:  2005-09-13       Impact factor: 8.029

9.  Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence.

Authors:  Daniel E Neafsey; Stephen F Schaffner; Sarah K Volkman; Daniel Park; Philip Montgomery; Danny A Milner; Amanda Lukens; David Rosen; Rachel Daniels; Nathan Houde; Joseph F Cortese; Erin Tyndall; Casey Gates; Nicole Stange-Thomann; Ousmane Sarr; Daouda Ndiaye; Omar Ndir; Soulyemane Mboup; Marcelo U Ferreira; Sandra do Lago Moraes; Aditya P Dash; Chetan E Chitnis; Roger C Wiegand; Daniel L Hartl; Bruce W Birren; Eric S Lander; Pardis C Sabeti; Dyann F Wirth
Journal:  Genome Biol       Date:  2008-12-15       Impact factor: 13.583

10.  Genome-wide and fine-resolution association analysis of malaria in West Africa.

Authors:  Muminatou Jallow; Yik Ying Teo; Kerrin S Small; Kirk A Rockett; Panos Deloukas; Taane G Clark; Katja Kivinen; Kalifa A Bojang; David J Conway; Margaret Pinder; Giorgio Sirugo; Fatou Sisay-Joof; Stanley Usen; Sarah Auburn; Suzannah J Bumpstead; Susana Campino; Alison Coffey; Andrew Dunham; Andrew E Fry; Angela Green; Rhian Gwilliam; Sarah E Hunt; Michael Inouye; Anna E Jeffreys; Alieu Mendy; Aarno Palotie; Simon Potter; Jiannis Ragoussis; Jane Rogers; Kate Rowlands; Elilan Somaskantharajah; Pamela Whittaker; Claire Widden; Peter Donnelly; Bryan Howie; Jonathan Marchini; Andrew Morris; Miguel SanJoaquin; Eric Akum Achidi; Tsiri Agbenyega; Angela Allen; Olukemi Amodu; Patrick Corran; Abdoulaye Djimde; Amagana Dolo; Ogobara K Doumbo; Chris Drakeley; Sarah Dunstan; Jennifer Evans; Jeremy Farrar; Deepika Fernando; Tran Tinh Hien; Rolf D Horstmann; Muntaser Ibrahim; Nadira Karunaweera; Gilbert Kokwaro; Kwadwo A Koram; Martha Lemnge; Julie Makani; Kevin Marsh; Pascal Michon; David Modiano; Malcolm E Molyneux; Ivo Mueller; Michael Parker; Norbert Peshu; Christopher V Plowe; Odile Puijalon; John Reeder; Hugh Reyburn; Eleanor M Riley; Anavaj Sakuntabhai; Pratap Singhasivanon; Sodiomon Sirima; Adama Tall; Terrie E Taylor; Mahamadou Thera; Marita Troye-Blomberg; Thomas N Williams; Michael Wilson; Dominic P Kwiatkowski
Journal:  Nat Genet       Date:  2009-05-24       Impact factor: 38.330
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  1 in total

Review 1.  Human Genomic Loci Important in Common Infectious Diseases: Role of High-Throughput Sequencing and Genome-Wide Association Studies.

Authors:  Gerald Mboowa; Ivan Sserwadda; Marion Amujal; Norah Namatovu
Journal:  Can J Infect Dis Med Microbiol       Date:  2018-03-20       Impact factor: 2.471
  1 in total

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