Literature DB >> 20643064

A three-state multi-ion kinetic model for conduction properties of ClC-0 chloride channel.

Xiao-Qing Wang1, Tao Yu, Jian-Ping Sang, Xian-Wu Zou, Tsung-Yu Chen, Diana Bolser, Xiaoqin Zou.   

Abstract

A three-state, multiion kinetic model was proposed to enable the conduction properties of the mammalian channel ClC-0 to be well characterized. Using this rate-theory based model, the current-voltage and conductance-concentration relations were obtained. The five parameters needed were determined by fitting the data of conduction experiments of the wild-type ClC-0 and its K519C mutant. The model was then tested against available calculation and simulation data, and the energy differences between distinct chloride-occupancy states computed agreed with an independent calculation on the binding free energies solved by using the Poisson-Boltzmann equation. The average ion number of conduction and the ion passing duration calculated closely resembled the values obtained from Brownian dynamics simulations. According to the model, the decrease of conductance caused by mutating residue K519 to C519 can be attributed to the effect of K519C mutation on translocation rate constants. Our study sets up a theoretical model for ion permeation and conductance in ClC-0. It provides a starting point for experimentalists to test the three-state model, and would help in understanding the conduction mechanism of ClC-0. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20643064      PMCID: PMC2905080          DOI: 10.1016/j.bpj.2010.04.047

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
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2.  Secondary active transport mediated by a prokaryotic homologue of ClC Cl- channels.

Authors:  Alessio Accardi; Christopher Miller
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

3.  Ion-binding properties of the ClC chloride selectivity filter.

Authors:  Séverine Lobet; Raimund Dutzler
Journal:  EMBO J       Date:  2005-12-08       Impact factor: 11.598

4.  Bead-like passage of chloride ions through ClC chloride channels.

Authors:  Atsushi Suenaga; Jay Z Yeh; Makoto Taiji; Akira Toyama; Hideo Takeuchi; Mingyu Son; Kazuyoshi Takayama; Masatoshi Iwamoto; Ikuro Sato; Toshio Narahashi; Akihiko Konagaya; Kunihiko Goto
Journal:  Biophys Chem       Date:  2005-11-09       Impact factor: 2.352

5.  K+ channel selectivity depends on kinetic as well as thermodynamic factors.

Authors:  Michael Grabe; Delphine Bichet; Xiang Qian; Yuh Nung Jan; Lily Yeh Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-18       Impact factor: 11.205

6.  Uncoupling and turnover in a Cl-/H+ exchange transporter.

Authors:  Michael Walden; Alessio Accardi; Fang Wu; Chen Xu; Carole Williams; Christopher Miller
Journal:  J Gen Physiol       Date:  2007-04       Impact factor: 4.086

Review 7.  Structure and function of clc channels.

Authors:  Tsung-Yu Chen
Journal:  Annu Rev Physiol       Date:  2005       Impact factor: 19.318

8.  Voltage-dependent electrogenic chloride/proton exchange by endosomal CLC proteins.

Authors:  Olaf Scheel; Anselm A Zdebik; Stéphane Lourdel; Thomas J Jentsch
Journal:  Nature       Date:  2005-07-21       Impact factor: 49.962

9.  Exterior site occupancy infers chloride-induced proton gating in a prokaryotic homolog of the ClC chloride channel.

Authors:  David L Bostick; Max L Berkowitz
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

10.  The ClC-0 chloride channel is a 'broken' Cl-/H+ antiporter.

Authors:  Jirí Lísal; Merritt Maduke
Journal:  Nat Struct Mol Biol       Date:  2008-07-20       Impact factor: 15.369

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  4 in total

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2.  Molecular dynamics investigation of Cl- and water transport through a eukaryotic CLC transporter.

Authors:  Mary Hongying Cheng; Rob D Coalson
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

3.  Influences of mutations on the electrostatic binding free energies of chloride ions in Escherichia coli ClC.

Authors:  Tao Yu; Xiao-Qing Wang; Jian-Ping Sang; Chun-Xu Pan; Xian-Wu Zou; Tsung-Yu Chen; Xiaoqin Zou
Journal:  J Phys Chem B       Date:  2012-05-29       Impact factor: 2.991

4.  Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA.

Authors:  Yuan-Yan Wu; Zhong-Liang Zhang; Jin-Si Zhang; Xiao-Long Zhu; Zhi-Jie Tan
Journal:  Nucleic Acids Res       Date:  2015-05-27       Impact factor: 16.971

  4 in total

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