Literature DB >> 20637293

Expressed sequence tags reveal Proctotrupomorpha (minus Chalcidoidea) as sister to Aculeata (Hymenoptera: Insecta).

Barbara J Sharanowski1, Barbara Robbertse, John Walker, S Randal Voss, Ryan Yoder, Joseph Spatafora, Michael J Sharkey.   

Abstract

Hymenoptera is one of the most diverse groups of animals on the planet and have vital importance for ecosystem function as pollinators and parasitoids. Higher-level relationships among Hymenoptera have been notoriously difficult to resolve with both morphological and traditional molecular approaches. Here we examined the utility of expressed sequence tags for resolving relationships among hymenopteran superfamilies. Transcripts were assembled for 6 disparate Hymenopteran taxa with additional sequences added from public databases for a final dataset of 24 genes for 16 taxa and over 10 kb of sequence data. The concatenated dataset recovered a robust and well-supported topology demonstrating the monophyly of Holometabola, Hymenoptera, Apocrita, Aculeata, Ichneumonoidea, and a sister relationship between the two most closely related proctotrupomorphs in the dataset (Cynipoidea+Proctotrupoidea). The data strongly supported a sister relationship between Aculeata and Proctotrupomorpha, contrary to previously proposed hypotheses. Additionally there was strong evidence indicating Ichneumonoidea as sister to Aculeata+Proctotrupomorpha. These relationships were robust to missing data, nucleotide composition biases, low taxonomic sampling, and conflicting signal across gene trees. There was also strong evidence indicating that Chalcidoidea is not contained within Proctotrupomorpha. Copyright 2010 Elsevier Inc. All rights reserved.

Mesh:

Year:  2010        PMID: 20637293     DOI: 10.1016/j.ympev.2010.07.006

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  12 in total

1.  Hal: an automated pipeline for phylogenetic analyses of genomic data.

Authors:  Barbara Robbertse; Ryan J Yoder; Alex Boyd; John Reeves; Joseph W Spatafora
Journal:  PLoS Curr       Date:  2011-02-07

2.  The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences.

Authors:  Ralph S Peters; Benjamin Meyer; Lars Krogmann; Janus Borner; Karen Meusemann; Kai Schütte; Oliver Niehuis; Bernhard Misof
Journal:  BMC Biol       Date:  2011-08-18       Impact factor: 7.431

3.  A molecular phylogeny of the Chalcidoidea (Hymenoptera).

Authors:  James B Munro; John M Heraty; Roger A Burks; David Hawks; Jason Mottern; Astrid Cruaud; Jean-Yves Rasplus; Petr Jansta
Journal:  PLoS One       Date:  2011-11-03       Impact factor: 3.240

4.  Head capsule characters in the Hymenoptera and their phylogenetic implications.

Authors:  Lars Vilhelmsen
Journal:  Zookeys       Date:  2011-09-24       Impact factor: 1.546

5.  Oligonucleotide primers for targeted amplification of single-copy nuclear genes in apocritan Hymenoptera.

Authors:  Gerrit Hartig; Ralph S Peters; Janus Borner; Claudia Etzbauer; Bernhard Misof; Oliver Niehuis
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

6.  Insect phylogenomics: exploring the source of incongruence using new transcriptomic data.

Authors:  Sabrina Simon; Apurva Narechania; Rob Desalle; Heike Hadrys
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

7.  Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera.

Authors:  Brant C Faircloth; Michael G Branstetter; Noor D White; Seán G Brady
Journal:  Mol Ecol Resour       Date:  2014-09-29       Impact factor: 7.090

8.  The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data.

Authors:  Seraina Klopfstein; Lars Vilhelmsen; John M Heraty; Michael Sharkey; Fredrik Ronquist
Journal:  PLoS One       Date:  2013-08-02       Impact factor: 3.240

9.  A multilocus phylogeny of the world Sycoecinae fig wasps (Chalcidoidea: Pteromalidae).

Authors:  Astrid Cruaud; Jenny G Underhill; Maïlis Huguin; Gwenaëlle Genson; Roula Jabbour-Zahab; Krystal A Tolley; Jean-Yves Rasplus; Simon van Noort
Journal:  PLoS One       Date:  2013-11-05       Impact factor: 3.240

10.  Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data.

Authors:  Jesse W Breinholt; Akito Y Kawahara
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

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