Literature DB >> 20636045

Single-biomolecule kinetics: the art of studying a single enzyme.

Victor I Claessen1, Hans Engelkamp, Peter C M Christianen, Jan C Maan, Roeland J M Nolte, Kerstin Blank, Alan E Rowan.   

Abstract

The potential of single-enzyme studies to unravel the complex energy landscape of these polymeric catalysts is the next critical step in enzymology. From its inception in Rotman's emulsion experiments in the 1960s, the field of single-molecule enzymology has now advanced into the time-resolved age. Technological advances have enabled individual enzymatic turnover reactions to be observed with a millisecond time resolution. A number of initial studies have revealed the underlying static and dynamic disorder in the catalytic rates originating from conformational fluctuations. Although these experiments are still in their infancy, they may be able to relate the topography of the energy landscape to the biological function and regulation of enzymes. This review summarizes some of the experimental techniques and data-analysis methods that have been used to study individual enzyme molecules in search of a deeper understanding of their kinetics.

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Year:  2010        PMID: 20636045     DOI: 10.1146/annurev.anchem.111808.073638

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   10.745


  8 in total

1.  Allosteric inhibition of individual enzyme molecules trapped in lipid vesicles.

Authors:  Hubert M Piwonski; Mila Goomanovsky; David Bensimon; Amnon Horovitz; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-04       Impact factor: 11.205

2.  Role of substrate unbinding in Michaelis-Menten enzymatic reactions.

Authors:  Shlomi Reuveni; Michael Urbakh; Joseph Klafter
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

3.  Temperature cycles unravel the dynamics of single biomolecules.

Authors:  Haifeng Yuan; Michel Orrit
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

4.  Electrochemical Zero-Mode Waveguide Potential-Dependent Fluorescence of Glutathione Reductase at Single-Molecule Occupancy.

Authors:  Seol Baek; Donghoon Han; Seung-Ryong Kwon; Vignesh Sundaresan; Paul W Bohn
Journal:  Anal Chem       Date:  2022-02-25       Impact factor: 6.986

5.  Sequence-dependent mechanochemical coupling of helicase translocation and unwinding at single-nucleotide resolution.

Authors:  Andrew H Laszlo; Jonathan M Craig; Momčilo Gavrilov; Ramreddy Tippana; Ian C Nova; Jesse R Huang; Hwanhee C Kim; Sarah J Abell; Mallory deCampos-Stairiker; Jonathan W Mount; Jasmine L Bowman; Katherine S Baker; Hugh Higinbotham; Dmitriy Bobrovnikov; Taekjip Ha; Jens H Gundlach
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-29       Impact factor: 12.779

Review 6.  Modelling single-molecule kinetics of helicase translocation using high-resolution nanopore tweezers (SPRNT).

Authors:  Jonathan M Craig; Andrew H Laszlo; Ian C Nova; Jens H Gundlach
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

7.  Single-molecule enzymatic conformational dynamics: spilling out the product molecules.

Authors:  Desheng Zheng; H Peter Lu
Journal:  J Phys Chem B       Date:  2014-07-28       Impact factor: 2.991

8.  Single-molecule theory of enzymatic inhibition.

Authors:  Tal Robin; Shlomi Reuveni; Michael Urbakh
Journal:  Nat Commun       Date:  2018-02-22       Impact factor: 14.919

  8 in total

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