| Literature DB >> 20625919 |
Norihide Hinomoto1, Yasuhiro Todokoro, Tomomi Higaki.
Abstract
The predatory mite Neoseiulus womersleyi (Schicha) (Acari: Phytoseiidae) is an important natural enemy of the Kanzawa spider mite, Tetranychus kanzawaki Kishida (Acari: Tetranychidae), in tea fields. Attraction and preservation of natural enemies by habitat management to reduce the need for acaricide sprays is thought to enhance the activity of N. womersleyi. To better conserve N. womersleyi in the field, however, it is essential to elucidate the population genetic structure of this species. To this end, we developed ten microsatellite DNA markers for N. womersleyi. We then evaluated population structure of N. womersleyi collected from a tea field, where Mexican sunflower, Tithonia rotundifolia (Mill.), was planted to preserve N. womersleyi. Seventy-seven adult females were collected from four sites within 200 m. The fixation indexes F (ST) among subpopulations were not significantly different. The kinship coefficients between individuals did not differ significantly within a site as a function of the sampling dates, but the coefficients gradually decreased with increasing distance. Bayesian clustering analysis revealed that the population consisted of three genetic clusters, and that subpopulations within 100 m, including those collected on T. rotundifolia, were genetically similar to each other. Given the previously observed population dynamics of N. womersleyi, it appears that the area inhabited by a given cluster of the mite did not exceed 100 m. The estimation of population structure using microsatellite markers will provide valuable information in conservation biological control.Entities:
Mesh:
Year: 2010 PMID: 20625919 PMCID: PMC2992129 DOI: 10.1007/s10493-010-9384-6
Source DB: PubMed Journal: Exp Appl Acarol ISSN: 0168-8162 Impact factor: 2.132
Fig. 1Locations of the four sites in the tea field where we collected Neoseiulus womersleyi. Sampling dates were shown in Table 1
Chemical pesticide sprayed in the tea field during our experiments
| Date | Site A | B | C | T |
|---|---|---|---|---|
| 22 May, 2008 | Fenpyroximate, Buprofezin | Fenpyroximate, Buprofezin | Flubendiamide, Chlorfenapyr | |
| 11 June | Acetamiprid | Acetamiprid | ||
| 18 June | Acetamiprid | |||
| 16 July | Imidacloprid, Iufenuron | |||
| 24 July | Cypermethrin | Cypermethrin | ||
| 24 July | Flubendiamide | Flubendiamide | ||
| 13 August | Sampling (B1)a | Sampling (T1)a | ||
| 14 August | Sampling (A1)a | |||
| 15 August | Clothianidin, Pyridaben | Sampling (T2)a | ||
| 16 August | Sampling (A2)a | |||
| 2 September | Sampling (B2)a | |||
| 12 September | Fenpyroximate, Emamectin benzoate | Permethrin, Acetamiprid | ||
| 17 September | Permethrin, Buprofezin | |||
| 18 September | Diafenthiuron | Diafenthiuron | ||
| 3 October | Sampling (C)a | |||
| 15 October | Sampling (C)a | |||
| 22 October | Sampling (C)a |
Dates of sampling Neoseiulus womersleyi were also described
aSampling of N. womersleyi. Codes in parenthesis are used for each subpopulation in text
Primer sequences, fluorescent dyes, groups simultaneously used for multiplex PCR, repeat motifs and accession numbers of the 10 microsatellite markers developed for Neoseiulus womersleyi
| Locus | Forward primera | Reverse primer | Groupb | Repeat motifc | Accession no |
|---|---|---|---|---|---|
|
| D3-CCTACCGTTAACCTGGCGTA | GAAAGCGTGAGGAGTGGAAC | C | (CT)16 | AB533197 |
|
| D2-GGATGAAGAGAGAGCGAGAAAGTAT | ACCTCCATTTTCTTCCTCCTT | A | (AG)11 | AB533198 |
|
| D4-CGCGAGCGAGCTTGTTTT | GTCCTCTTCCGATCAACACC | D | (CT)23 | AB533199 |
|
| D4-TTCATCTCTCGACCCTCTCC | GGAGGAAACTAGGAGCTGGA | B | (TC)9 | AB533200 |
|
| D2-CAGAGAACGAGAAGAGATCAGG | CATCGTCAGACTTTGTTCCTGT | B | (GA)8 | AB533201 |
|
| D3-CTGGAGCCCCTCGAAGTTTA | GGGCTCGAAAGGTTCAAAA | C | (CT)12 | AB533202 |
|
| D4-TTCGTGAAATTCGTTGATCG | AGTGACGATTTCGCCTCAAA | C | (TTTCTCTC)26 | AB533203 |
|
| D2-TTCGTCGTCTGTGGAAGTTG | AGCGCAATCGCTTCAAAGT | D | (CT)10 | AB533204 |
|
| D4-ATGGCGATACGACGACAAA | CGCTCGCTGAACTCAAATAG | A | (GA)24 | AB533205 |
|
| D2-CAAGTTTCCAGCTCGGTCAT | GCAGAAGGAGCTACTGAAGCA | D | (CT)23 | AB533206 |
aBeckman dyes were at the 5′ end
bLoci with same character are simultaneously amplified in the same PCR reaction
cFrom the sequenced clones
Numbers of alleles observed (NA), observed allele size ranges (bp), allelic richness (AR), expected and observed heterozygosities (He and Ho, respectively), inbreeding coefficients (F IS), and null allele frequencies (NF) for the 10 microsatellite markers obtained from the field population
| Locus | NA | Size range (bp) | AR |
|
|
| NF |
|---|---|---|---|---|---|---|---|
|
| 58 | 108–452 | 3.871 | 75.307 | 63*** | 0.164 | 0.083 |
|
| 20 | 129–177 | 3.539 | 67.021 | 37*** | 0.450 | 0.226 |
|
| 11 | 58–86 | 3.254 | 42.134 | 13*** | 0.694 | 0.341 |
|
| 10 | 63–85 | 3.050 | 52.189 | 47 | 0.100 | 0.070 |
|
| 21 | 97–161 | 3.211 | 63.874 | 57 | 0.108 | 0.069 |
|
| 14 | 85–159 | 3.221 | 62.172 | 18*** | 0.712 | 0.332 |
|
| 11 | 137–203 | 2.902 | 49.128 | 17*** | 0.656 | 0.294 |
|
| 19 | 101–143 | 3.599 | 63.193 | 28*** | 0.559 | 0.272 |
|
| 13 | 61–89 | 3.400 | 65.973 | 64 | 0.030 | 0.017 |
|
| 22 | 118–166 | 3.374 | 66.114 | 52*** | 0.215 | 0.116 |
*** Significant difference between He and Ho (P < 0.001; Hardy–Weinberg exact test)
Results of tests for genotypic disequilibrium between pairs of loci developed for Neoseiulus womersleyi
|
|
|
|
|
|
|
|
|
| |
|---|---|---|---|---|---|---|---|---|---|
|
| 1.0000 | 1.0000 | 1.0000 | 1.0000 | 1.0000 | 1.0000 | 0.0567 | 1.0000 | 1.0000 |
|
| 1.0000 | 1.0000 | 0.0989 | 0.2378 | 0.8489 | 0.1400 | 1.0000 | 0.0800 | |
|
| 0.5844 | 1.0000 | 0.6222 | 1.0000 | 0.2356 | 1.0000 | 0.4733 | ||
|
| 0.4989 | 0.8233 | 0.7522 | 1.0000 | 0.1622 | 1.0000 | |||
|
| 0.1744 | 0.4833 | 1.0000 | 0.4200 | 0.2167 | ||||
|
| 0.3378 | 0.0389* | 0.3156 | 0.0222* | |||||
|
| 0.1533 | 0.2622 | 0.8567 | ||||||
|
| 1.0000 | 1.0000 | |||||||
|
| 1.0000 |
The probable independence of each pair of loci is shown
* Significant genotypic disequilibrium (P < 0.05)
Fig. 2Graphical inference to estimate the number of genetic clusters using the STRUCTURE software. (A) Mean log-likelihood values [L(K)] ± SD as a function of K, for K = 1 to K = 30, where K represents the number of clusters. (B) Rate of change in the log-likelihood of the data (∆K; Evanno et al. 2005) as a function of K
Fig. 3The results of Bayesian clustering analysis and individual assignment analysis of Neoseiulus womersleyi using the STRUCTURE software for three clusters. The x-axis of the bar chars represents individual mites. The y-axis of the bar chars represents the individual assignment probabilities. Black, grey, and white components of each bar represent the proportion in each of the three clusters
Multilocus estimates of pairwise F ST (above diagonal) and pairwise significance after standard Bonferroni corrections by overall loci G-statistics (below diagonal) among subpopulations of Neoseiulus womersleyi
| T1 | T2 | B1 | B2 | A1 | A2 | C1 | |
|---|---|---|---|---|---|---|---|
| T1 | 0.0082 | 0.0143 | −0.0037 | 0.0346 | 0.0386 | 0.0399 | |
| T2 | NS | 0.0161 | 0.0172 | 0.0144 | 0.0432 | 0.0182 | |
| B1 | NS | NS | −0.0155 | 0.0187 | 0.0442 | 0.0636 | |
| B2 | NS | NS | NS | 0.0058 | 0.0261 | 0.0482 | |
| A1 | NS | NS | NS | NS | −0.0075 | 0.0417 | |
| A2 | NS | NS | NS | NS | NS | 0.0935 | |
| C1 | NS | NS | NS | NS | NS | NS |
G-statistics were calculated based on allele frequencies after correction of null alleles. Significance levels were determined by 420 permutations. NS not significant
Fig. 4Neighbour–joining tree for seven subpopulations of Neoseiulus womersleyi collected in the tea field based on the Cavalli-Sforza and Edwards’ (1967) chord distance (Dc). Numbers are bootstrap support indices on loci (left) and on individuals (right), respectively
Fig. 5The average and SD of the kinship coefficients (Loiselle et al. 1995) between individual Neoseiulus womersleyi grouped into each 50-m distance. Points labelled with different letters differ significantly (P < 0.05; pairwise comparisons using the Wilcoxon rank-sum test adjusted using Holm’s method)