Literature DB >> 20624688

Toxicogenomics using yeast DNA microarrays.

Daisuke Yasokawa1, Hitoshi Iwahashi.   

Abstract

Development of genomics and bioinformatics enable us to analyze the global gene expression profiles of cells by DNA microarray. Changes in gene expression patterns indicate changes in its physiological conditions. Following the exposure of an organism or cell to toxic chemicals or other environmental stresses, the global genetic responses can be expeditiously and easily analyzed. Baker's yeast, Saccharomyces cerevisiae, is one of the most studied and useful model eukaryotes. The biggest advantage of yeast genomics is the available functional information for each gene and a considerable number of data are accumulating in the field of toxicity assessment using yeast DNA microarray. In this review, we discuss the toxicogenomics of metal ions, alcohols and aldehydes, and other chemicals.
Copyright © 2010 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20624688     DOI: 10.1016/j.jbiosc.2010.06.003

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  11 in total

1.  Involvement of the pleiotropic drug resistance response, protein kinase C signaling, and altered zinc homeostasis in resistance of Saccharomyces cerevisiae to diclofenac.

Authors:  Jolanda S van Leeuwen; Nico P E Vermeulen; J Chris Vos
Journal:  Appl Environ Microbiol       Date:  2011-07-01       Impact factor: 4.792

2.  TinderMIX: Time-dose integrated modelling of toxicogenomics data.

Authors:  Angela Serra; Michele Fratello; Giusy Del Giudice; Laura Aliisa Saarimäki; Michelangelo Paci; Antonio Federico; Dario Greco
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

Review 3.  Toxicological challenges to microbial bioethanol production and strategies for improved tolerance.

Authors:  Hannah Akinosho; Thomas Rydzak; Abhijeet Borole; Arthur Ragauskas; Dan Close
Journal:  Ecotoxicology       Date:  2015-09-30       Impact factor: 2.823

4.  Transcriptome Analysis on Key Metabolic Pathways in Rhodotorula mucilaginosa Under Pb(II) Stress.

Authors:  Tianyi Chen; Yixiao Shi; Chao Peng; Lingyi Tang; Yanting Chen; Tong Wang; Zhijun Wang; Shimei Wang; Zhen Li
Journal:  Appl Environ Microbiol       Date:  2022-03-21       Impact factor: 5.005

5.  Comparative analysis of transcriptomic responses to sub-lethal levels of six environmentally relevant pesticides in Saccharomyces cerevisiae.

Authors:  Fátima N Gil; Alina C Gonçalves; Jörg D Becker; Cristina A Viegas
Journal:  Ecotoxicology       Date:  2018-04-02       Impact factor: 2.823

Review 6.  Exploitation of genomics in fungicide research: current status and future perspectives.

Authors:  Hans J Cools; Kim E Hammond-Kosack
Journal:  Mol Plant Pathol       Date:  2012-11-16       Impact factor: 5.663

7.  Genome-wide toxicogenomic study of the lanthanides sheds light on the selective toxicity mechanisms associated with critical materials.

Authors:  Roger M Pallares; David Faulkner; Dahlia D An; Solène Hébert; Alex Loguinov; Michael Proctor; Jonathan A Villalobos; Kathleen A Bjornstad; Chris J Rosen; Christopher Vulpe; Rebecca J Abergel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-04       Impact factor: 11.205

8.  Transcriptome response to alkane biofuels in Saccharomyces cerevisiae: identification of efflux pumps involved in alkane tolerance.

Authors:  Hua Ling; Binbin Chen; Aram Kang; Jong-Min Lee; Matthew Wook Chang
Journal:  Biotechnol Biofuels       Date:  2013-07-05       Impact factor: 6.040

Review 9.  Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data.

Authors:  Benjamin Alexander-Dann; Lavinia Lorena Pruteanu; Erin Oerton; Nitin Sharma; Ioana Berindan-Neagoe; Dezső Módos; Andreas Bender
Journal:  Mol Omics       Date:  2018-08-06

10.  Different Toxicity Mechanisms for Citrinin and Ochratoxin A Revealed by Transcriptomic Analysis in Yeast.

Authors:  Elena Vanacloig-Pedros; Markus Proft; Amparo Pascual-Ahuir
Journal:  Toxins (Basel)       Date:  2016-09-22       Impact factor: 4.546

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