Literature DB >> 20623263

Orthopaedic literature and MeSH.

Stuart J Nelson1, Jacque-Lynne Schulman.   

Abstract

BACKGROUND: Since 1916 there has been a recognized demand for a method of classification of orthopaedic literature inclusive enough to permit the proper collection and retrieval of all literature on the subject. Today, MEDLINE, available through the PubMed interface, has become the de facto standard for organization and retrieval of medical literature. The Medical Subject Headings (MeSH), used to provide indexing and assist in searching, are partly responsible for this standard. Understanding how MeSH is built and maintained may lead the user to a better understanding of how to use MEDLINE, and what to expect from the indexing of an article. QUESTIONS/PURPOSES: The purpose of this review is to provide an understanding of the organization of large quantities of indexed material, the indexing process and the considerations involved in developing an indexing vocabulary. WHERE ARE WE NOW?: Successful terminology development and use, a prerequisite for any sharing of information by electronic means, depends on both user (how the user is expected to use the system) and information (how the information is organized) models. MEDLINE has a simple user model and a simpler information model. The user is expected to determine what is relevant and which MeSH descriptors are appropriate. WHERE DO WE NEED TO GO?: While MEDLINE through PubMed is a success as viewed by the number of hits, further improvements will depend on better, faster indexing with a controlled terminology. Terminology development requires careful consideration of the nature of the subject, how users employ the terminology, the overall purpose of the terminology, and the framework of the systems in which it is used. HOW DO WE GET THERE?: For the future, understanding terminology development might enable the user to comprehend some of the issues involved in sharing of other information by electronic means. Further improvements in the availability and accessibility of medical literature will depend on continued maintenance and development of MeSH, as well as on refinement of the indexing process.

Mesh:

Year:  2010        PMID: 20623263      PMCID: PMC3049625          DOI: 10.1007/s11999-010-1387-4

Source DB:  PubMed          Journal:  Clin Orthop Relat Res        ISSN: 0009-921X            Impact factor:   4.176


  10 in total

1.  The NLM Indexing Initiative.

Authors:  A R Aronson; O Bodenreider; H F Chang; S M Humphrey; J G Mork; S J Nelson; T C Rindflesch; W J Wilbur
Journal:  Proc AMIA Symp       Date:  2000

2.  Mapping in PubMed.

Authors:  Lou Wave S Knecht; Stuart J Nelson
Journal:  J Med Libr Assoc       Date:  2002-10

3.  The NLM Indexing Initiative's Medical Text Indexer.

Authors:  Alan R Aronson; James G Mork; Clifford W Gay; Susanne M Humphrey; Willie J Rogers
Journal:  Stud Health Technol Inform       Date:  2004

4.  Semi-automatic indexing of full text biomedical articles.

Authors:  Clifford W Gay; Mehmet Kayaalp; Alan R Aronson
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Besides precision & recall: exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE.

Authors:  Aurélie Neveol; Kelly Zeng; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  Multiple approaches to fine-grained indexing of the biomedical literature.

Authors:  Aurelie Neveol; Sonya E Shooshan; Susanne M Humphrey; Thomas C Rindflesh; Alan R Aronson
Journal:  Pac Symp Biocomput       Date:  2007

7.  Fine-grained indexing of the biomedical literature: MeSH subheading attachment for a MEDLINE indexing tool.

Authors:  Aurélie Névéol; Sonya E Shooshan; James G Mork; Alan R Aronson
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

8.  A strategy for assigning new concepts in the MEDLINE database.

Authors:  Won Kim; W John Wilbur
Journal:  AMIA Annu Symp Proc       Date:  2005

9.  A recent advance in the automatic indexing of the biomedical literature.

Authors:  Aurélie Névéol; Sonya E Shooshan; Susanne M Humphrey; James G Mork; Alan R Aronson
Journal:  J Biomed Inform       Date:  2008-12-30       Impact factor: 6.317

10.  Automatic inference of indexing rules for MEDLINE.

Authors:  Aurélie Névéol; Sonya E Shooshan; Vincent Claveau
Journal:  BMC Bioinformatics       Date:  2008-11-19       Impact factor: 3.169

  10 in total
  4 in total

1.  Detection and characterization of translational research in cancer and cardiovascular medicine.

Authors:  David S Jones; Alberto Cambrosio; Andrei Mogoutov
Journal:  J Transl Med       Date:  2011-05-11       Impact factor: 5.531

2.  Aber-OWL: a framework for ontology-based data access in biology.

Authors:  Robert Hoehndorf; Luke Slater; Paul N Schofield; Georgios V Gkoutos
Journal:  BMC Bioinformatics       Date:  2015-01-28       Impact factor: 3.169

3.  Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases.

Authors:  Robert Hoehndorf; Paul N Schofield; Georgios V Gkoutos
Journal:  Sci Rep       Date:  2015-06-08       Impact factor: 4.379

4.  Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics.

Authors:  Martin Hrabě de Angelis; George Nicholson; Mohammed Selloum; Jacqui White; Hugh Morgan; Ramiro Ramirez-Solis; Tania Sorg; Sara Wells; Helmut Fuchs; Martin Fray; Chris Holmes; Karen P Steel; Yann Herault; Valérie Gailus-Durner; Ann-Marie Mallon; Steve Dm Brown; David J Adams; Niels C Adams; Thure Adler; Antonio Aguilar-Pimentel; Dalila Ali-Hadji; Gregory Amann; Philippe André; Sarah Atkins; Aurelie Auburtin; Abdel Ayadi; Julien Becker; Lore Becker; Elodie Bedu; Raffi Bekeredjian; Marie-Christine Birling; Andrew Blake; Joanna Bottomley; Mike Bowl; Véronique Brault; Dirk H Busch; James N Bussell; Julia Calzada-Wack; Heather Cater; Marie-France Champy; Philippe Charles; Claire Chevalier; Francesco Chiani; Gemma F Codner; Roy Combe; Roger Cox; Emilie Dalloneau; André Dierich; Armida Di Fenza; Brendan Doe; Arnaud Duchon; Oliver Eickelberg; Chris T Esapa; Lahcen El Fertak; Tanja Feigel; Irina Emelyanova; Jeanne Estabel; Jack Favor; Ann Flenniken; Alessia Gambadoro; Lilian Garrett; Hilary Gates; Anna-Karin Gerdin; George Gkoutos; Simon Greenaway; Lisa Glasl; Patrice Goetz; Isabelle Goncalves Da Cruz; Alexander Götz; Jochen Graw; Alain Guimond; Wolfgang Hans; Geoff Hicks; Sabine M Hölter; Heinz Höfler; John M Hancock; Robert Hoehndorf; Tertius Hough; Richard Houghton; Anja Hurt; Boris Ivandic; Hughes Jacobs; Sylvie Jacquot; Nora Jones; Natasha A Karp; Hugo A Katus; Sharon Kitchen; Tanja Klein-Rodewald; Martin Klingenspor; Thomas Klopstock; Valerie Lalanne; Sophie Leblanc; Christoph Lengger; Elise le Marchand; Tonia Ludwig; Aline Lux; Colin McKerlie; Holger Maier; Jean-Louis Mandel; Susan Marschall; Manuel Mark; David G Melvin; Hamid Meziane; Kateryna Micklich; Christophe Mittelhauser; Laurent Monassier; David Moulaert; Stéphanie Muller; Beatrix Naton; Frauke Neff; Patrick M Nolan; Lauryl Mj Nutter; Markus Ollert; Guillaume Pavlovic; Natalia S Pellegata; Emilie Peter; Benoit Petit-Demoulière; Amanda Pickard; Christine Podrini; Paul Potter; Laurent Pouilly; Oliver Puk; David Richardson; Stephane Rousseau; Leticia Quintanilla-Fend; Mohamed M Quwailid; Ildiko Racz; Birgit Rathkolb; Fabrice Riet; Janet Rossant; Michel Roux; Jan Rozman; Ed Ryder; Jennifer Salisbury; Luis Santos; Karl-Heinz Schäble; Evelyn Schiller; Anja Schrewe; Holger Schulz; Ralf Steinkamp; Michelle Simon; Michelle Stewart; Claudia Stöger; Tobias Stöger; Minxuan Sun; David Sunter; Lydia Teboul; Isabelle Tilly; Glauco P Tocchini-Valentini; Monica Tost; Irina Treise; Laurent Vasseur; Emilie Velot; Daniela Vogt-Weisenhorn; Christelle Wagner; Alison Walling; Bruno Weber; Olivia Wendling; Henrik Westerberg; Monja Willershäuser; Eckhard Wolf; Anne Wolter; Joe Wood; Wolfgang Wurst; Ali Önder Yildirim; Ramona Zeh; Andreas Zimmer; Annemarie Zimprich
Journal:  Nat Genet       Date:  2015-07-27       Impact factor: 38.330

  4 in total

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