Literature DB >> 20615992

A generalized Fisher equation and its utility in chemical kinetics.

John Ross1, Alejandro Fernández Villaverde, Julio R Banga, Sara Vázquez, Federico Morán.   

Abstract

A generalized Fisher equation (GFE) relates the time derivative of the average of the intrinsic rate of growth to its variance. The GFE is an exact mathematical result that has been widely used in population dynamics and genetics, where it originated. Here we demonstrate that the GFE can also be useful in other fields, specifically in chemistry, with models of two chemical reaction systems for which the mechanisms and rate coefficients correspond reasonably well to experiments. A bad fit of the GFE can be a sign of high levels of measurement noise; for low or moderate levels of noise, fulfillment of the GFE is not degraded. Hence, the GFE presents a noise threshold that may be used to test the validity of experimental measurements without requiring any additional information. In a different approach information about the system (model) is included in the calculations. In that case, the discrepancy with the GFE can be used as an optimization criterion for the determination of rate coefficients in a given reaction mechanism.

Entities:  

Year:  2010        PMID: 20615992      PMCID: PMC2919940          DOI: 10.1073/pnas.1008257107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  3 in total

1.  Fisher Information Study in Position and Momentum Spaces for Elementary Chemical Reactions.

Authors:  Sheila López-Rosa; Rodolfo O Esquivel; Juan Carlos Angulo; Juan Antolín; Jesús S Dehesa; Nelson Flores-Gallegos
Journal:  J Chem Theory Comput       Date:  2009-12-22       Impact factor: 6.006

2.  Fisher's theorems for multivariable, time- and space-dependent systems, with applications in population genetics and chemical kinetics.

Authors:  Marcel O Vlad; Stefan E Szedlacsek; Nader Pourmand; L Luca Cavalli-Sforza; Peter Oefner; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-30       Impact factor: 11.205

3.  Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.

Authors:  Maria Rodriguez-Fernandez; Jose A Egea; Julio R Banga
Journal:  BMC Bioinformatics       Date:  2006-11-02       Impact factor: 3.169

  3 in total
  1 in total

1.  Common enzymological experiments allow free energy profile determination.

Authors:  Michael D Toney
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

  1 in total

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