Literature DB >> 20609412

Chemical genomic approaches to study model microbes.

Courtney A Barker1, Maya A Farha, Eric D Brown.   

Abstract

Recent genome-scale analyses of genetic interactions in model microbes have revealed the inherent functional organization of the cell as a dense network of highly interconnected pathways. While classical one gene at a time paradigms offer limited insight into cellular systems, genome-scale approaches are making considerable headway. Indeed, where small organic compounds are ideal probes of biological complexity, systematic chemical genomic methods are emerging as requisite and powerful approaches to describing both the small molecule probe and network with which it interacts. Here, we highlight various chemical genomic approaches that are being pioneered in model microbes.

Mesh:

Year:  2010        PMID: 20609412     DOI: 10.1016/j.chembiol.2010.05.010

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  8 in total

Review 1.  Bugs, drugs and chemical genomics.

Authors:  Terry Roemer; Julian Davies; Guri Giaever; Corey Nislow
Journal:  Nat Chem Biol       Date:  2011-12-15       Impact factor: 15.040

2.  Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Authors:  Camha Nguyen; Jeffrey Grimes; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chemistry       Date:  2011-09-28       Impact factor: 5.236

3.  Phenotypic landscape of a bacterial cell.

Authors:  Robert J Nichols; Saunak Sen; Yoe Jin Choo; Pedro Beltrao; Matylda Zietek; Rachna Chaba; Sueyoung Lee; Krystyna M Kazmierczak; Karis J Lee; Angela Wong; Michael Shales; Susan Lovett; Malcolm E Winkler; Nevan J Krogan; Athanasios Typas; Carol A Gross
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

4.  Simultaneous elucidation of antibiotic mechanism of action and potency with high-throughput Fourier-transform infrared (FTIR) spectroscopy and machine learning.

Authors:  Bernardo Ribeiro da Cunha; Luís P Fonseca; Cecília R C Calado
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-14       Impact factor: 4.813

5.  Systems-level antimicrobial drug and drug synergy discovery.

Authors:  Terry Roemer; Charles Boone
Journal:  Nat Chem Biol       Date:  2013-04       Impact factor: 15.040

6.  Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria.

Authors:  Rembrandt J F Haft; David H Keating; Tyler Schwaegler; Michael S Schwalbach; Jeffrey Vinokur; Mary Tremaine; Jason M Peters; Matthew V Kotlajich; Edward L Pohlmann; Irene M Ong; Jeffrey A Grass; Patricia J Kiley; Robert Landick
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

7.  Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria.

Authors:  Vivek K Mutalik; Pavel S Novichkov; Morgan N Price; Trenton K Owens; Mark Callaghan; Sean Carim; Adam M Deutschbauer; Adam P Arkin
Journal:  Nat Commun       Date:  2019-01-18       Impact factor: 14.919

Review 8.  Technologies for High-Throughput Identification of Antibiotic Mechanism of Action.

Authors:  Bernardo Ribeiro da Cunha; Paulo Zoio; Luís P Fonseca; Cecília R C Calado
Journal:  Antibiotics (Basel)       Date:  2021-05-12
  8 in total

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