Literature DB >> 2060653

Structure of coiled beta-beta-hairpins and beta-beta-corners.

A V Efimov1.   

Abstract

Two types of super-secondary structure, coiled beta-beta-hairpins and beta-beta-corners, are considered in this paper. A beta-beta-corner can be represented as a long beta-beta-hairpin folded orthogonally on itself so that the strands, when passing from one layer to the other, rotate in a right-handed direction about an imaginary axis. It is shown that a beta-beta-hairpin, forming a coiled coil structure or a beta-beta-corner, is right-handed when viewed from the concave side. These unique arrangements of beta-strands in the coiled beta-beta-hairpins and beta-beta-corners are of particular value in protein modelling and prediction.

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Year:  1991        PMID: 2060653     DOI: 10.1016/0014-5793(91)80706-9

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

1.  Analysis of loop boundaries using different local structure assignment methods.

Authors:  Manoj Tyagi; Aurélie Bornot; Bernard Offmann; Alexandre G de Brevern
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

2.  Pi-turns in proteins and peptides: Classification, conformation, occurrence, hydration and sequence.

Authors:  K R Rajashankar; S Ramakumar
Journal:  Protein Sci       Date:  1996-05       Impact factor: 6.725

3.  Super-secondary structure peptidomimetics: design and synthesis of an α-α hairpin analogue.

Authors:  Laura Nevola; Johanna M Rodriguez; Sam Thompson; Andrew D Hamilton
Journal:  Supramol Chem       Date:  2013-09-01       Impact factor: 1.688

4.  Mining protein loops using a structural alphabet and statistical exceptionality.

Authors:  Leslie Regad; Juliette Martin; Gregory Nuel; Anne-Claude Camproux
Journal:  BMC Bioinformatics       Date:  2010-02-04       Impact factor: 3.169

Review 5.  Current Approaches in Supersecondary Structures Investigation.

Authors:  Vladimir R Rudnev; Liudmila I Kulikova; Kirill S Nikolsky; Kristina A Malsagova; Arthur T Kopylov; Anna L Kaysheva
Journal:  Int J Mol Sci       Date:  2021-11-02       Impact factor: 5.923

6.  Molecular Dynamics Study of Citrullinated Proteins Associated with the Development of Rheumatoid Arthritis.

Authors:  Amir Taldaev; Vladimir Rudnev; Liudmila Kulikova; Kirill Nikolsky; Alexander Efimov; Kristina Malsagova; Anna Kaysheva
Journal:  Proteomes       Date:  2022-02-11

7.  MSDmotif: exploring protein sites and motifs.

Authors:  Adel Golovin; Kim Henrick
Journal:  BMC Bioinformatics       Date:  2008-07-17       Impact factor: 3.169

  7 in total

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