Literature DB >> 20600268

Comparative studies on the extraction of metagenomic DNA from the saline habitats of Coastal Gujarat and Sambhar Lake, Rajasthan (India) in prospect of molecular diversity and search for novel biocatalysts.

P K Siddhapura1, S Vanparia, M K Purohit, S P Singh.   

Abstract

Extraction of total DNA from a given habitat assumes significance in metagenomics, due to the requirement of inhibitor free and high quality metagenome in good quantity for applications in molecular biology. DNA extraction and its quality assessment for PCR applications from saline soils of Coastal Gujarat and Sambhar Soda Lake, Rajasthan in India is described in a comparative manner. The mechanical and soft lysis methods were simple and efficient for rapid isolation of PCR amplifiable total genomic DNA. The results are significant as only few extreme environments, particularly saline habitats are explored for their metagenomic potential.

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Year:  2010        PMID: 20600268     DOI: 10.1016/j.ijbiomac.2010.06.004

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  8 in total

1.  Comparison of performance and efficiency of four methods to extract genomic DNA from oil contaminated soils in southwestern of Iran.

Authors:  Yalda Basim; Sahand Jorfi; Mehdi Ahmadi Moghadam; Nematollah Jaafarzadeh Haghighi Fard; Ghasemali Mohebali; Ramin Nabizadeh; Ata Ghadiri; Farid Soleymani
Journal:  J Environ Health Sci Eng       Date:  2020-06-11

2.  An improved method suitable for isolation of high-quality metagenomic DNA from diverse soils.

Authors:  Sumit Kumar Verma; Himanshi Singh; Prakash C Sharma
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

3.  Extraction of the metagenomic DNA and assessment of the bacterial diversity from the petroleum-polluted sites.

Authors:  Viral G Akbari; Rupal D Pandya; Satya P Singh
Journal:  Environ Monit Assess       Date:  2014-05-29       Impact factor: 2.513

4.  Statistical assessment of DNA extraction methodology for culture-independent analysis of microbial community associated with diverse environmental samples.

Authors:  Rishi Mahajan; Sampan Attri; Kavita Sharma; Niharika Singh; Deepika Sharma; Gunjan Goel
Journal:  Mol Biol Rep       Date:  2018-02-16       Impact factor: 2.316

5.  A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications.

Authors:  Selvaraju Gayathri Devi; Anwar Aliya Fathima; Sudhakar Radha; Rex Arunraj; Wayne R Curtis; Mohandass Ramya
Journal:  PLoS One       Date:  2015-07-13       Impact factor: 3.240

6.  High-quality metagenomic DNA from marine sediment samples for genomic studies through a preprocessing approach.

Authors:  Solly Solomon; Bhavya Kachiprath; G Jayanath; T P Sajeevan; I S Bright Singh; Rosamma Philip
Journal:  3 Biotech       Date:  2016-08-06       Impact factor: 2.406

7.  Evaluation of five in situ lysis protocols for PCR amenable metagenomic DNA from mangrove soils.

Authors:  Harisree P Nair; Helvin Vincent; Sarita G Bhat
Journal:  Biotechnol Rep (Amst)       Date:  2014-09-30

8.  Biases in Prokaryotic Community Amplicon Sequencing Affected by DNA Extraction Methods in Both Saline and Non-saline Soil.

Authors:  Kehui Xie; Yong Deng; Xuze Zhang; Xueting Wang; Guangbo Kang; Liang Bai; He Huang
Journal:  Front Microbiol       Date:  2018-08-03       Impact factor: 5.640

  8 in total

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