Literature DB >> 20600115

Disulfide bond stabilization of the hexameric capsomer of human immunodeficiency virus.

Owen Pornillos1, Barbie K Ganser-Pornillos, Sankaran Banumathi, Yuanzi Hua, Mark Yeager.   

Abstract

The human immunodeficiency virus type 1 capsid is modeled as a fullerene cone that is composed of approximately 250 hexamers and 12 pentamers of the viral CA protein. Structures of CA hexamers have been difficult to obtain because the hexamer-stabilizing interactions are inherently weak, and CA tends to spontaneously assemble into capsid-like particles. Here, we describe a two-step biochemical strategy to obtain soluble CA hexamers for crystallization. First, the hexamer was stabilized by engineering disulfide cross-links (either A14C/E45C or A42C/T54C) between the N-terminal domains of adjacent subunits. Second, the cross-linked hexamers were prevented from polymerizing further into hyperstable capsid-like structures by mutations (W184A and M185A) that interfered with dimeric association between the C-terminal domains that link adjacent hexamers. The structures of two different cross-linked CA hexamers were nearly identical, and we combined the non-mutated portions of the structures to generate an atomic resolution model for the native hexamer. This hybrid approach for structure determination should be applicable to other viral capsomers and protein-protein complexes in general. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20600115      PMCID: PMC3050670          DOI: 10.1016/j.jmb.2010.06.042

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  42 in total

1.  Image reconstructions of helical assemblies of the HIV-1 CA protein.

Authors:  S Li; C P Hill; W I Sundquist; J T Finch
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

2.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

3.  Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein.

Authors:  C C Cornilescu; F Bouamr; X Yao; C Carter; N Tjandra
Journal:  J Mol Biol       Date:  2001-03-02       Impact factor: 5.469

4.  Trapping of a catalytic HIV reverse transcriptase*template:primer complex through a disulfide bond.

Authors:  H Huang; S C Harrison; G L Verdine
Journal:  Chem Biol       Date:  2000-05

5.  Structure of the N-terminal 283-residue fragment of the immature HIV-1 Gag polyprotein.

Authors:  Chun Tang; Yasmine Ndassa; Michael F Summers
Journal:  Nat Struct Biol       Date:  2002-07

6.  Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.

Authors:  Brett M Forshey; Uta von Schwedler; Wesley I Sundquist; Christopher Aiken
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

7.  Solution structure and dynamics of the Rous sarcoma virus capsid protein and comparison with capsid proteins of other retroviruses.

Authors:  R Campos-Olivas; J L Newman; M F Summers
Journal:  J Mol Biol       Date:  2000-02-18       Impact factor: 5.469

8.  Allosteric disulfide bonds.

Authors:  Bryan Schmidt; Lorraine Ho; Philip J Hogg
Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

9.  Analysis of Rous sarcoma virus capsid protein variants assembled on lipid monolayers.

Authors:  Keith Mayo; Marcy L Vana; Jason McDermott; Doug Huseby; Jonathan Leis; Eric Barklis
Journal:  J Mol Biol       Date:  2002-02-22       Impact factor: 5.469

10.  NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus.

Authors:  Pavel Macek; Josef Chmelík; Ivana Krízová; Pavel Kaderávek; Petr Padrta; Lukás Zídek; Marcela Wildová; Romana Hadravová; Radka Chaloupková; Iva Pichová; Tomás Ruml; Michaela Rumlová; Vladimír Sklenár
Journal:  J Mol Biol       Date:  2009-06-13       Impact factor: 5.469

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  59 in total

1.  Disulfide linkages mediating nucleocapsid protein dimerization are not required for porcine arterivirus infectivity.

Authors:  Rong Zhang; Chunyan Chen; Zhi Sun; Feifei Tan; Jinshan Zhuang; Debin Tian; Guangzhi Tong; Shishan Yuan
Journal:  J Virol       Date:  2012-02-01       Impact factor: 5.103

2.  Inhibiting early-stage events in HIV-1 replication by small-molecule targeting of the HIV-1 capsid.

Authors:  Sandhya Kortagere; Navid Madani; Marie K Mankowski; Arne Schön; Isaac Zentner; Gokul Swaminathan; Amy Princiotto; Kevin Anthony; Apara Oza; Luz-Jeannette Sierra; Shendra R Passic; Xiaozhao Wang; David M Jones; Eric Stavale; Fred C Krebs; Julio Martín-García; Ernesto Freire; Roger G Ptak; Joseph Sodroski; Simon Cocklin; Amos B Smith
Journal:  J Virol       Date:  2012-05-30       Impact factor: 5.103

3.  Exploring Modifications of an HIV-1 Capsid Inhibitor: Design, Synthesis, and Mechanism of Action.

Authors:  Jimmy P Xu; Ashwanth C Francis; Megan E Meuser; Marie Mankowski; Roger G Ptak; Adel A Rashad; Gregory B Melikyan; Simon Cocklin
Journal:  J Drug Des Res       Date:  2018-08-13

4.  Hexagonal assembly of a restricting TRIM5alpha protein.

Authors:  Barbie K Ganser-Pornillos; Viswanathan Chandrasekaran; Owen Pornillos; Joseph G Sodroski; Wesley I Sundquist; Mark Yeager
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

5.  FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking.

Authors:  Pei-Tzu Huang; Brady James Summers; Chaoyi Xu; Juan R Perilla; Viacheslav Malikov; Mojgan H Naghavi; Yong Xiong
Journal:  Cell Rep       Date:  2019-08-14       Impact factor: 9.423

6.  Can HIV p24 be a suitable scaffold for presenting Env antigens?

Authors:  Luigi Buonaguro; Maria Tagliamonte; Maria Lina Tornesello; Franco M Buonaguro
Journal:  Clin Vaccine Immunol       Date:  2011-09-07

7.  Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.

Authors:  Akash Bhattacharya; Steven L Alam; Thomas Fricke; Kaneil Zadrozny; Jaroslaw Sedzicki; Alexander B Taylor; Borries Demeler; Owen Pornillos; Barbie K Ganser-Pornillos; Felipe Diaz-Griffero; Dmitri N Ivanov; Mark Yeager
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-17       Impact factor: 11.205

8.  Microplate-based assay for identifying small molecules that bind a specific intersubunit interface within the assembled HIV-1 capsid.

Authors:  Upul D Halambage; Jason P Wong; Bruce J Melancon; Craig W Lindsley; Christopher Aiken
Journal:  Antimicrob Agents Chemother       Date:  2015-06-15       Impact factor: 5.191

9.  Second site reversion of a mutation near the amino terminus of the HIV-1 capsid protein.

Authors:  Claudia S López; Seyram M Tsagli; Rachel Sloan; Jacob Eccles; Eric Barklis
Journal:  Virology       Date:  2013-09-21       Impact factor: 3.616

10.  Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.

Authors:  Francesca Di Nunzio; Thomas Fricke; Annarita Miccio; Jose Carlos Valle-Casuso; Patricio Perez; Philippe Souque; Ermanno Rizzi; Marco Severgnini; Fulvio Mavilio; Pierre Charneau; Felipe Diaz-Griffero
Journal:  Virology       Date:  2013-03-21       Impact factor: 3.616

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