Literature DB >> 20598875

Parallel gateways to pluripotency: open chromatin in stem cells and development.

Fong Ming Koh1, Michael Sachs, Marcela Guzman-Ayala, Miguel Ramalho-Santos.   

Abstract

Open chromatin is a hallmark of pluripotent stem cells, but the underlying molecular mechanisms are only beginning to be unraveled. In this review we highlight recent studies that employ embryonic stem cells and induced pluripotent stem cells to investigate the regulation of open chromatin and its role in the maintenance and acquisition of pluripotency in vitro. We suggest that findings from in vitro studies using pluripotent stem cells are predictive of in vivo processes of epigenetic regulation of pluripotency, specifically in the development of the zygote and primordial germ cells. The combination of in vitro and in vivo approaches is expected to provide a comprehensive understanding of the epigenetic regulation of pluripotency and reprograming.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID： 20598875      PMCID： PMC2943036          DOI： 10.1016/j.gde.2010.06.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN： 0959-437X            Impact factor:   5.578


  77 in total

1.  An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.

Authors:  Lena Ho; Raja Jothi; Jehnna L Ronan; Kairong Cui; Keji Zhao; Gerald R Crabtree
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

2.  An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency.

Authors:  Lena Ho; Jehnna L Ronan; Jiang Wu; Brett T Staahl; Lei Chen; Ann Kuo; Julie Lessard; Alexey I Nesvizhskii; Jeff Ranish; Gerald R Crabtree
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

3.  iPS cells: insights into basic biology.

Authors:  Miguel Ramalho-Santos
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

4.  Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures.

Authors:  Mark H Chin; Mike J Mason; Wei Xie; Stefano Volinia; Mike Singer; Cory Peterson; Gayane Ambartsumyan; Otaren Aimiuwu; Laura Richter; Jin Zhang; Ivan Khvorostov; Vanessa Ott; Michael Grunstein; Neta Lavon; Nissim Benvenisty; Carlo M Croce; Amander T Clark; Tim Baxter; April D Pyle; Mike A Teitell; Matteo Pelegrini; Kathrin Plath; William E Lowry
Journal:  Cell Stem Cell       Date:  2009-07-02       Impact factor: 24.633

5.  Chd1 regulates open chromatin and pluripotency of embryonic stem cells.

Authors:  Alexandre Gaspar-Maia; Adi Alajem; Fanny Polesso; Rupa Sridharan; Mike J Mason; Amy Heidersbach; João Ramalho-Santos; Michael T McManus; Kathrin Plath; Eran Meshorer; Miguel Ramalho-Santos
Journal:  Nature       Date:  2009-07-08       Impact factor: 49.962

6.  Role of the murine reprogramming factors in the induction of pluripotency.

Authors:  Rupa Sridharan; Jason Tchieu; Mike J Mason; Robin Yachechko; Edward Kuoy; Steve Horvath; Qing Zhou; Kathrin Plath
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

7.  Transcription in the absence of histone H3.3.

Authors:  Martina Hödl; Konrad Basler
Journal:  Curr Biol       Date:  2009-06-11       Impact factor: 10.834

8.  Distinctive chromatin in human sperm packages genes for embryo development.

Authors:  Saher Sue Hammoud; David A Nix; Haiying Zhang; Jahnvi Purwar; Douglas T Carrell; Bradley R Cairns
Journal:  Nature       Date:  2009-06-14       Impact factor: 49.962

9.  Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells.

Authors:  Siqin Bao; Fuchou Tang; Xihe Li; Katsuhiko Hayashi; Astrid Gillich; Kaiqin Lao; M Azim Surani
Journal:  Nature       Date:  2009-10-29       Impact factor: 49.962

10.  DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45.

Authors:  Kunal Rai; Ian J Huggins; Smitha R James; Adam R Karpf; David A Jones; Bradley R Cairns
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582
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  7 in total

1.  Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline.

Authors:  Jianqiang Bao; Jingwen Wu; Andrew S Schuster; Grant W Hennig; Wei Yan
Journal:  Biol Reprod       Date:  2013-11-07       Impact factor: 4.285

2.  The trithorax group protein Ash2l is essential for pluripotency and maintaining open chromatin in embryonic stem cells.

Authors:  Ma Wan; Jiancong Liang; Yuanyan Xiong; Fengtao Shi; Yi Zhang; Weisi Lu; Quanyuan He; Dong Yang; Rui Chen; Dan Liu; Michelle Barton; Zhou Songyang
Journal:  J Biol Chem       Date:  2012-12-13       Impact factor: 5.157

3.  Parental competition for the regulators of chromatin dynamics in mouse zygotes.

Authors:  Masatoshi Ooga; Rei Inoue; Kousuke Kazama; Sayaka Wakayama; Satoshi Kamimura; Teruhiko Wakayama
Journal:  Commun Biol       Date:  2022-07-14

Review 4.  Epigenetic regulation of open chromatin in pluripotent stem cells.

Authors:  Hiroshi Kobayashi; Nobuaki Kikyo
Journal:  Transl Res       Date:  2014-03-13       Impact factor: 7.012

5.  SirT1 brings stemness closer to cancer and aging.

Authors:  Vincenzo Calvanese; Mario F Fraga
Journal:  Aging (Albany NY)       Date:  2011-02       Impact factor: 5.682

6.  Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells.

Authors:  Kaimeng Huang; Xiaobai Zhang; Jiejun Shi; Mingze Yao; Jiannan Lin; Jiao Li; He Liu; Huanhuan Li; Guang Shi; Zhibin Wang; Biliang Zhang; Jiekai Chen; Guangjin Pan; Cizhong Jiang; Duanqing Pei; Hongjie Yao
Journal:  Sci Rep       Date:  2015-12-07       Impact factor: 4.379

Review 7.  Stem cell systems and regeneration in planaria.

Authors:  Jochen C Rink
Journal:  Dev Genes Evol       Date:  2012-11-09       Impact factor: 0.900
  7 in total

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