Literature DB >> 20595230

Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites.

Hyun-Sook Park1, Yngve Ostberg, Jörgen Johansson, E Gerhart H Wagner, Bernt Eric Uhlin.   

Abstract

In Escherichia coli, the major nucleoid protein H-NS limits transcription by acting as a repressor or transcriptional silencer, presumably by its ability to close the looped chromosome domains in the nucleoid through DNA-protein-DNA bridging. Here, we demonstrate the direct involvement of H-NS as a positive factor stimulating translation of the malT mRNA. In vitro studies showed that H-NS facilitates a repositioning of the 30S preinitiation complex on the malT mRNA. H-NS stimulation of translation depended on the AU-rich -35 to -40 region of the mRNA. Several additional examples were found demonstrating a novel function for H-NS in translation of genes with suboptimal ribosome-binding sequences.

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Year:  2010        PMID: 20595230      PMCID: PMC2895194          DOI: 10.1101/gad.576310

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  31 in total

1.  Heteromeric interactions among nucleoid-associated bacterial proteins: localization of StpA-stabilizing regions in H-NS of Escherichia coli.

Authors:  J Johansson; S Eriksson; B Sondén; S N Wai; B E Uhlin
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

2.  A plant viral "reinitiation" factor interacts with the host translational machinery.

Authors:  H S Park; A Himmelbach; K S Browning; T Hohn; L A Ryabova
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

3.  Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation.

Authors:  Anastassia V Komarova; Ludmila S Tchufistova; Elena V Supina; Irina V Boni
Journal:  RNA       Date:  2002-09       Impact factor: 4.942

4.  Mfold web server for nucleic acid folding and hybridization prediction.

Authors:  Michael Zuker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 5.  The bacterial regulatory protein H-NS--a versatile modulator of nucleic acid structures.

Authors:  Oliver Schröder; Rolf Wagner
Journal:  Biol Chem       Date:  2002-06       Impact factor: 3.915

6.  The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo.

Authors:  Cristin C Brescia; Meenakshi K Kaw; Darren D Sledjeski
Journal:  J Mol Biol       Date:  2004-06-04       Impact factor: 5.469

7.  Preparation of Escherichia coli cell extract for highly productive cell-free protein expression.

Authors:  Takanori Kigawa; Takashi Yabuki; Natsuko Matsuda; Takayoshi Matsuda; Rie Nakajima; Akiko Tanaka; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2004

8.  Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein.

Authors:  A J Varshavsky; S A Nedospasov; V V Bakayev; T G Bakayeva; G P Georgiev
Journal:  Nucleic Acids Res       Date:  1977-08       Impact factor: 16.971

9.  Role of the histone-like nucleoid structuring protein in the regulation of rpoS and RpoS-dependent genes in Vibrio cholerae.

Authors:  Anisia J Silva; Syed Zafar Sultan; Weili Liang; Jorge A Benitez
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

10.  Expression of malT, the regulator gene of the maltose region in Escherichia coli, is limited both at transcription and translation.

Authors:  C Chapon
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  16 in total

Review 1.  H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments.

Authors:  Ricksen S Winardhi; Jie Yan; Linda J Kenney
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

2.  Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins.

Authors:  Shivalika Saxena; J Gowrishankar
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

Review 3.  Transcription of Bacterial Chromatin.

Authors:  Beth A Shen; Robert Landick
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

4.  Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription.

Authors:  Richard Janissen; Mathia M A Arens; Natalia N Vtyurina; Zaïda Rivai; Nicholas D Sunday; Behrouz Eslami-Mossallam; Alexey A Gritsenko; Liedewij Laan; Dick de Ridder; Irina Artsimovitch; Nynke H Dekker; Elio A Abbondanzieri; Anne S Meyer
Journal:  Cell       Date:  2018-07-26       Impact factor: 41.582

5.  Silencing cryptic specialized metabolism in Streptomyces by the nucleoid-associated protein Lsr2.

Authors:  Emma J Gehrke; Xiafei Zhang; Sheila M Pimentel-Elardo; Andrew R Johnson; Christiaan A Rees; Stephanie E Jones; Sebastian S Gehrke; Sonya Turvey; Suzanne Boursalie; Jane E Hill; Erin E Carlson; Justin R Nodwell; Marie A Elliot
Journal:  Elife       Date:  2019-06-19       Impact factor: 8.140

Review 6.  Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom.

Authors:  Haley M Amemiya; Jeremy Schroeder; Peter L Freddolino
Journal:  Transcription       Date:  2021-09-09

7.  The Master Quorum-Sensing Regulator OpaR is Activated Indirectly by H-NS in Vibrio parahaemolyticus.

Authors:  Yiquan Zhang; Lingyu Zhang; Shuning Hou; Xinxiang Huang; Fengjun Sun; He Gao
Journal:  Curr Microbiol       Date:  2016-03-30       Impact factor: 2.188

8.  A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.

Authors:  Chi Nhan Tran; Mara Giangrossi; Gianni Prosseda; Anna Brandi; Maria Letizia Di Martino; Bianca Colonna; Maurizio Falconi
Journal:  Nucleic Acids Res       Date:  2011-06-30       Impact factor: 16.971

9.  Exposure to Glycolytic Carbon Sources Reveals a Novel Layer of Regulation for the MalT Regulon.

Authors:  Sylvia A Reimann; Alan J Wolfe
Journal:  Int J Microbiol       Date:  2011-08-14

10.  H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions.

Authors:  Shivani S Singh; David C Grainger
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

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