Literature DB >> 20593213

Solvation free energies of glutamate and its metal complexes: a computer simulation study.

Sepideh Ketabi1, Haleh Hashemi Haeri, Seyed Majid Hashemianzadeh.   

Abstract

Most biological ion channels demonstrate a high degree of selectivity for one type of ion more than others, and in many cases, how they control attaining this is still not clear. So we have studied on some metal ion compounds of glutamate. The Glutamate and its meal ion compounds (Ca(2+), Na(+), K(+) and Li(+)) were first modeled by ab initio calculations and then Monte Carlo simulation was used to calculate solvation free energies and also the complexes free energies for the related structures. The results indicated that Glutamate-Ca(2+) have more stability in water than other metal ion. Also, it was found out that the more movement in ions; less stability of the structure would result. This trend can be seen both in gas and liquid phase.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20593213     DOI: 10.1007/s00894-010-0776-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  21 in total

Review 1.  From structure to function in open ionic channels.

Authors:  R S Eisenberg
Journal:  J Membr Biol       Date:  1999-09-01       Impact factor: 1.843

Review 2.  Recent advances in ion channel research.

Authors:  Shin Ho Chung; Serdar Kuyucak
Journal:  Biochim Biophys Acta       Date:  2002-10-11

3.  Electrostatic basis of valence selectivity in cationic channels.

Authors:  Ben Corry; Taira Vora; Shin-Ho Chung
Journal:  Biochim Biophys Acta       Date:  2005-03-24

4.  Charged amino acids near the pore entrance influence ion-conduction of a human L-type cardiac calcium channel.

Authors:  A Bahinski; A Yatani; G Mikala; S Tang; S Yamamoto; A Schwartz
Journal:  Mol Cell Biochem       Date:  1997-01       Impact factor: 3.396

5.  Ca2+ channel selectivity at a single locus for high-affinity Ca2+ interactions.

Authors:  P T Ellinor; J Yang; W A Sather; J F Zhang; R W Tsien
Journal:  Neuron       Date:  1995-11       Impact factor: 17.173

6.  Molecular determinants of Ca2+ selectivity and ion permeation in L-type Ca2+ channels.

Authors:  J Yang; P T Ellinor; W A Sather; J F Zhang; R W Tsien
Journal:  Nature       Date:  1993-11-11       Impact factor: 49.962

7.  Simulation of DNA bases in water: Comparison of the Monte Carlo algorithm with molecular mechanics force fields.

Authors:  M Monajjemi; S Ketabi; M Hashemian Zadeh; A Amiri
Journal:  Biochemistry (Mosc)       Date:  2006       Impact factor: 2.487

Review 8.  Progress and prospects in permeation.

Authors:  W Nonner; D P Chen; B Eisenberg
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

Review 9.  Ionic hopping defended.

Authors:  C Miller
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

Review 10.  Calcium channel permeation: A field in flux.

Authors:  E W McCleskey
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

View more
  1 in total

1.  Conformational analysis of glutamic acid: a density functional approach using implicit continuum solvent model.

Authors:  Başak Turan; Cenk Selçuki
Journal:  J Mol Model       Date:  2014-08-19       Impact factor: 1.810

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.