Literature DB >> 20592262

QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa.

Dong Whan Lee1, Ryan Millimaki, Rodolfo Aramayo.   

Abstract

Among the processes that play essential roles in both genome defense and organism survival are those involved in chromosome comparison. They are acutely active in the meiotic cells of Neurospora crassa, where they evaluate the mutual identity of homologs by a process we call trans-sensing. When nonsymmetrical regions are found, they are silenced. The known molecular components of this meiotic silencing machinery are related to RNA-dependent RNA polymerases, Argonautes and Dicers, suggesting that the mechanisms of how heterologous chromosomal regions are silenced involves, at some stage, the production of small interfering RNAs. Neurospora has two active and clearly distinct RNA interference pathways: quelling (vegetative specific) and meiotic silencing (meiosis specific). Both pathways require a common set of protein types like RNA-dependent RNA polymerases, Argonautes and Dicers. In this work we demonstrate the involvement of quelling defective-2 interacting protein (qip(+)), a Neurospora gene whose function is essential to silencing by quelling, in meiotic silencing, and normal sexual development. Our observations reinforce the molecular connection between these two silencing pathways.

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Year:  2010        PMID: 20592262      PMCID: PMC2940281          DOI: 10.1534/genetics.110.118422

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  28 in total

1.  Gene silencing in worms and fungi.

Authors:  C Catalanotto; G Azzalin; G Macino; C Cogoni
Journal:  Nature       Date:  2000-03-16       Impact factor: 49.962

Review 2.  Recognition and silencing of repeated DNA.

Authors:  J Hsieh; A Fire
Journal:  Annu Rev Genet       Date:  2000       Impact factor: 16.830

Review 3.  Homology-dependent gene silencing mechanisms in fungi.

Authors:  C Cogoni
Journal:  Annu Rev Microbiol       Date:  2001       Impact factor: 15.500

4.  Construction of strains for rapid homokaryon purification after integration of constructs at the histidine-3 ( his-3) locus of Neurospora crassa.

Authors:  Dong W Lee; Jeremy R Haag; Rodolfo Aramayo
Journal:  Curr Genet       Date:  2003-02-18       Impact factor: 3.886

5.  An argonaute-like protein is required for meiotic silencing.

Authors:  Dong W Lee; Robert J Pratt; Malcolm McLaughlin; Rodolfo Aramayo
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

6.  Improving the efficiency of gene replacements in Neurospora crassa: a first step towards a large-scale functional genomics project.

Authors:  Robert J Pratt; Rodolfo Aramayo
Journal:  Fungal Genet Biol       Date:  2002-10       Impact factor: 3.495

7.  QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA.

Authors:  Hua Xiao; William G Alexander; Thomas M Hammond; Erin C Boone; Tony D Perdue; Patricia J Pukkila; Patrick K T Shiu
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

8.  DNA methylation affects meiotic trans-sensing, not meiotic silencing, in Neurospora.

Authors:  Robert J Pratt; Dong W Lee; Rodolfo Aramayo
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

9.  Meiotic silencing by unpaired DNA.

Authors:  P K Shiu; N B Raju; D Zickler; R L Metzenberg
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

10.  The genome sequence of the filamentous fungus Neurospora crassa.

Authors:  James E Galagan; Sarah E Calvo; Katherine A Borkovich; Eric U Selker; Nick D Read; David Jaffe; William FitzHugh; Li-Jun Ma; Serge Smirnov; Seth Purcell; Bushra Rehman; Timothy Elkins; Reinhard Engels; Shunguang Wang; Cydney B Nielsen; Jonathan Butler; Matthew Endrizzi; Dayong Qui; Peter Ianakiev; Deborah Bell-Pedersen; Mary Anne Nelson; Margaret Werner-Washburne; Claude P Selitrennikoff; John A Kinsey; Edward L Braun; Alex Zelter; Ulrich Schulte; Gregory O Kothe; Gregory Jedd; Werner Mewes; Chuck Staben; Edward Marcotte; David Greenberg; Alice Roy; Karen Foley; Jerome Naylor; Nicole Stange-Thomann; Robert Barrett; Sante Gnerre; Michael Kamal; Manolis Kamvysselis; Evan Mauceli; Cord Bielke; Stephen Rudd; Dmitrij Frishman; Svetlana Krystofova; Carolyn Rasmussen; Robert L Metzenberg; David D Perkins; Scott Kroken; Carlo Cogoni; Giuseppe Macino; David Catcheside; Weixi Li; Robert J Pratt; Stephen A Osmani; Colin P C DeSouza; Louise Glass; Marc J Orbach; J Andrew Berglund; Rodger Voelker; Oded Yarden; Michael Plamann; Stephan Seiler; Jay Dunlap; Alan Radford; Rodolfo Aramayo; Donald O Natvig; Lisa A Alex; Gertrud Mannhaupt; Daniel J Ebbole; Michael Freitag; Ian Paulsen; Matthew S Sachs; Eric S Lander; Chad Nusbaum; Bruce Birren
Journal:  Nature       Date:  2003-04-24       Impact factor: 49.962

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  12 in total

1.  QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA.

Authors:  Hua Xiao; William G Alexander; Thomas M Hammond; Erin C Boone; Tony D Perdue; Patricia J Pukkila; Patrick K T Shiu
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

Review 2.  RNA interference in fungi: pathways, functions, and applications.

Authors:  Yunkun Dang; Qiuying Yang; Zhihong Xue; Yi Liu
Journal:  Eukaryot Cell       Date:  2011-07-01

3.  Identification of small RNAs associated with meiotic silencing by unpaired DNA.

Authors:  Thomas M Hammond; William G Spollen; Logan M Decker; Sean M Blake; Gordon K Springer; Patrick K T Shiu
Journal:  Genetics       Date:  2013-03-15       Impact factor: 4.562

4.  Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa.

Authors:  Thomas M Hammond; Hua Xiao; Erin C Boone; Logan M Decker; Seung A Lee; Tony D Perdue; Patricia J Pukkila; Patrick K T Shiu
Journal:  Genetics       Date:  2013-03-15       Impact factor: 4.562

5.  Efficient detection of unpaired DNA requires a member of the rad54-like family of homologous recombination proteins.

Authors:  Dilini A Samarajeewa; Pegan A Sauls; Kevin J Sharp; Zachary J Smith; Hua Xiao; Katie M Groskreutz; Tyler L Malone; Erin C Boone; Kevin A Edwards; Patrick K T Shiu; Erik D Larson; Thomas M Hammond
Journal:  Genetics       Date:  2014-08-21       Impact factor: 4.562

Review 6.  Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures.

Authors:  Meritxell Riquelme; Jesús Aguirre; Salomon Bartnicki-García; Gerhard H Braus; Michael Feldbrügge; Ursula Fleig; Wilhelm Hansberg; Alfredo Herrera-Estrella; Jörg Kämper; Ulrich Kück; Rosa R Mouriño-Pérez; Norio Takeshita; Reinhard Fischer
Journal:  Microbiol Mol Biol Rev       Date:  2018-04-11       Impact factor: 11.056

Review 7.  Ascus dysgenesis in hybrid crosses of Neurospora and Sordaria (Sordariaceae).

Authors:  Durgadas P Kasbekar
Journal:  J Genet       Date:  2017-07       Impact factor: 1.166

8.  Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery.

Authors:  Rebecca L Barnes; Huafang Shi; Nikolay G Kolev; Christian Tschudi; Elisabetta Ullu
Journal:  PLoS Pathog       Date:  2012-05-24       Impact factor: 6.823

9.  SAD-3, a Putative Helicase Required for Meiotic Silencing by Unpaired DNA, Interacts with Other Components of the Silencing Machinery.

Authors:  Thomas M Hammond; Hua Xiao; Erin C Boone; Tony D Perdue; Patricia J Pukkila; Patrick K T Shiu
Journal:  G3 (Bethesda)       Date:  2011-10-01       Impact factor: 3.154

10.  Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon.

Authors:  Yizhou Wang; Kristina M Smith; John W Taylor; Michael Freitag; Jason E Stajich
Journal:  G3 (Bethesda)       Date:  2015-06-23       Impact factor: 3.154

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