Literature DB >> 20590216

Dielectric properties of fully hydrated nucleotides in the terahertz frequency range.

P Glancy1, W P Beyermann.   

Abstract

We use terahertz time domain spectroscopy (THz-TDS) to determine the complex frequency-dependent dielectric response of all four nucleotides at different dilute concentrations. In addition, the suspension model's ability to extract the dielectric response of just the nucleotide with the hydration shell epsilon(b) excluding the dielectric information relating to the bulk will be verified. The suspension model enables us to make the determination that the nucleotides have influences on the water molecules out to the fourth hydration shell. We use a two Debye relaxation fit model for water, all concentrations and all epsilon(b) values. We observed how the nucleotides affect the relaxation parameters in relation to that of pure bulk water. With this information, we notice a transition between purines and pyrimidines, where one is a hydrogen-bond network structure building type material with a low concentration increment and the other is a structure breaking type material with a low concentration decrement. Due to conductivity measurements, we determine that kinetic depolarization is a negligible affect compared to that of dielectric saturation, which we find to dominate where a decrement is found.

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Year:  2010        PMID: 20590216     DOI: 10.1063/1.3457941

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Concentration-dependent effects on fully hydrated DNA at terahertz frequencies.

Authors:  P Glancy
Journal:  J Biol Phys       Date:  2015-02-21       Impact factor: 1.365

Review 2.  Why Proteins are Big: Length Scale Effects on Equilibria and Kinetics.

Authors:  Kenneth A Rubinson
Journal:  Protein J       Date:  2019-04       Impact factor: 2.371

3.  Hydration Shells of DNA from the Point of View of Terahertz Time-Domain Spectroscopy.

Authors:  Nadezda A Penkova; Mars G Sharapov; Nikita V Penkov
Journal:  Int J Mol Sci       Date:  2021-10-14       Impact factor: 5.923

  3 in total

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